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The map label for this gene is ykfC [H]

Identifier: 167039968

GI number: 167039968

Start: 1364264

End: 1365175

Strand: Direct

Name: ykfC [H]

Synonym: Teth514_1325

Alternate gene names: 167039968

Gene position: 1364264-1365175 (Clockwise)

Preceding gene: 167039964

Following gene: 167039969

Centisome position: 55.52

GC content: 38.93

Gene sequence:

>912_bases
ATGGACTCGAAAGATATGCAGAGACTGCAGACAACTCAACAAAGAGGCTATCCGTTGAATAGAGAAATGGAATTTCAAAA
GACAACGGAAGTGCATAGTATATCATCGGCGTCAAAAGATAGAAGAAACGATGTACAAAGATATACCAGCAAGATGCTTG
AAATGATAGTAGAACGAGGAAACATGAGAGCAGCATACAAGCGCGTTGTTGCAAATAAAGGAAGCCATGGAGTCGATGGG
ATGGAAGTAGATGAACTTCTACCGTATCTCAAAGAAAACTGGCCAACCATAAAACAACAACTGCTGGAGGGGAAATACAA
ACCACAACCAGTGCGAAGAGTAGAAATTCCCAAACCAGATGGAGGAGTAAGACTACTAGGAATACCTACAGCACTAGATA
GGTTAATACAACAAGCAATAGCCCAAATACTAAATAGAGTCTACAACCATACATTTTCTGATAGCAGTTATGGATTCAGA
CCAGGACGCAGTGCAAAAGACGCAATAAAAGCCGCAGAAGCATATATAAATGAAGGATATACATGGGTTGTAGATATGGA
CTTAGAAAAGTTCTTTGACAGAGTAAACCACGACATAATAATGTCCAAACTAGAAAAGCGGATAGGAGACAAAAGAGTAC
TAAAGTTAATAAGAAGATACTTAGAATCAGGAGTAATGATAAACGGAGTCAAAGTATCAACAGAAGAAGGGACACCCCAA
GGAGGGCCATTAAGTCCCCTATTAGCAAACATAATGTTGGACGAACTAGACAAAGAACTTGAAAAGAGAGGACACAAATT
CTGTCGGTACGCAGATGACTGCAACATATATGTAAAAAGCAGGTCTGCAGGAAACAGAGTAATGAAGAGCATAAAGAAAT
TCATAGAAAGCAAATGTCATTTCTCAAATTAA

Upstream 100 bases:

>100_bases
GATGTATGGTTGAACCTTGAGAAGTCAGCAGAGGTCATAGTACTTATCTAGTCATGAATAGATAAGGAAGGGCCGAACGT
TAGGAGGTTTTGGAAATCTT

Downstream 100 bases:

>100_bases
TTTAGCCCAAAACCGATAAAATTTTTCAGATTAAATAATCTTGTGATAAAATTAATGCTAAAGGAATTTGATAAATTTTT
TTCAGATTCCTTTAGCATTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKCHFSN

Sequences:

>Translated_303_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKCHFSN
>Mature_303_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKCHFSN

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=240, Percent_Identity=31.6666666666667, Blast_Score=132, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=32.1951219512195, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 34835; Mature: 34835

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERG
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NMRAAYKRVVANKGSHGVDGMEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKCH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
FSN
CCC
>Mature Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERG
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NMRAAYKRVVANKGSHGVDGMEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKCH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
FSN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]