Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 167039928

GI number: 167039928

Start: 1321485

End: 1322816

Strand: Direct

Name: rarA [H]

Synonym: Teth514_1284

Alternate gene names: 167039928

Gene position: 1321485-1322816 (Clockwise)

Preceding gene: 167039927

Following gene: 167039930

Centisome position: 53.78

GC content: 35.96

Gene sequence:

>1332_bases
ATGGAATACAAACAAGTATCTATATTTGATAATGAAGTGAAAAAAAATAAACCTTTGGCCGACAGGATGAGACCCAAAAC
TTTAGATGAGTTTGTAGGTCAAGAACATCTTTTAGGTAAAGGGAAATTACTTAGGGAATTGATTGAAAAAGACAATATTA
CTTCAATGATTTTATGGGGGCCGCCAGGGGTAGGTAAAACTACCCTTGCTATGATTATAGCCAATATGACAAATTCTAAA
TTTGTCACCTTTAGTGCTGTTTTATCAGGCATCAAAGAGATAAAGGAGATAATGGCAAAAGCTGAATTGGATGCTATGTA
TGGAACTAGAACTGTTGTATTTATTGATGAAATTCATCGATTTAATAAAGCCCAGCAGGATGCTTTTTTGCCTCATGTGG
AAAAGGGGAATATAATATTAATTGGTGCAACTACTGAAAATCCCTCTTTTGAGGTAAATTCTGCTCTTTTGTCTCGTTCT
AAAGTTTTTGTCATGAAACCTCTTACAGAAGAGGATTTACTTATACTGCTTAAAAGAGCGTTAAAAGATGAACAAAATGG
ATTTGGCATGTACAAAATTGGTATAACAGATGAACAGCTCAAAAAAATTGCACTTTTTGCAAATGGTGATGCAAGGGTTG
CTTTAAACACATTAGAAATTGCGGTTATGGGGGCTAAAGTAATTGAAGGGGAAAGAATTGTCACAGATGATATATTAGCT
GATGCAATGCAGAAAAAGACTCTGCTTTACGACAAACAAGGAGAAGAACACTATAATTTAATATCTGCTTTTCATAAATC
TTTAAGAAATAGCGATTGGGATGCGGCAGTGTATTGGCTTGCAAGGATGTTAGAAGCGGGAGAAGACCCTCTCTATGTCG
CAAGAAGGATGATACGCTTTGCTTCTGAAGATATTGGGCTTGCAGATCCTCAAGCTCTTGAAATGGCTGTTGCAGCATAT
AATGCTTGCCATTATATTGGAATGCCTGAATGTAGTGTAAATCTGGCACAGGTGGCAATATATTTAGCGTTAGCTCCTAA
ATCTAATGCGGTATACGTGGCATATAATAAAGCTAAAAAAGATGCAGAAAAGACAATTGCTGAAAGTGTGCCTATGCATT
TAAGAAATGCTCCTACAAAGCTTATGAAAGAATTAGGATATGGCAAAGGGTATAAGTATGCACACGACTTTGAAGAGAAA
GTAACAGATATGCAATGTCTACCGGATAATCTTAAAGACAGGAAATACTATGTACCGACGGATTCTGGTTTTGAGAAGGA
CATACAAAGGAGATTAGAGCAAATCACCAACTTAAAAAAGAAAGGAAAATAA

Upstream 100 bases:

>100_bases
GAATTTTTAGAAGAGGACTTTGTAAAAGTTACTATAAAGTTCCGATTAAAAGAAAAAAGAAAGAAAAAGTACAAAAATAA
AACTTAAATGGTGAGAAAAT

Downstream 100 bases:

>100_bases
TTTTGAGCTGTTTAATAAAAAGGGGCAGTTGCCCCTTTTTATTAAACAGCGTTTTTAGGTTCTTCCCATATGATGATGCC
AGGTACAAATAACAAAATTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MEYKQVSIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIANMTNSK
FVTFSAVLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRS
KVFVMKPLTEEDLLILLKRALKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA
DAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPLYVARRMIRFASEDIGLADPQALEMAVAAY
NACHYIGMPECSVNLAQVAIYLALAPKSNAVYVAYNKAKKDAEKTIAESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEK
VTDMQCLPDNLKDRKYYVPTDSGFEKDIQRRLEQITNLKKKGK

Sequences:

>Translated_443_residues
MEYKQVSIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIANMTNSK
FVTFSAVLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRS
KVFVMKPLTEEDLLILLKRALKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA
DAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPLYVARRMIRFASEDIGLADPQALEMAVAAY
NACHYIGMPECSVNLAQVAIYLALAPKSNAVYVAYNKAKKDAEKTIAESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEK
VTDMQCLPDNLKDRKYYVPTDSGFEKDIQRRLEQITNLKKKGK
>Mature_443_residues
MEYKQVSIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIANMTNSK
FVTFSAVLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRS
KVFVMKPLTEEDLLILLKRALKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA
DAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPLYVARRMIRFASEDIGLADPQALEMAVAAY
NACHYIGMPECSVNLAQVAIYLALAPKSNAVYVAYNKAKKDAEKTIAESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEK
VTDMQCLPDNLKDRKYYVPTDSGFEKDIQRRLEQITNLKKKGK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=445, Percent_Identity=48.7640449438202, Blast_Score=420, Evalue=1e-117,
Organism=Homo sapiens, GI18426904, Length=445, Percent_Identity=44.2696629213483, Blast_Score=363, Evalue=1e-100,
Organism=Homo sapiens, GI6677723, Length=238, Percent_Identity=24.3697478991597, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1787119, Length=418, Percent_Identity=49.7607655502392, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1788167, Length=136, Percent_Identity=33.0882352941176, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=411, Percent_Identity=44.7688564476886, Blast_Score=330, Evalue=3e-91,
Organism=Saccharomyces cerevisiae, GI6324039, Length=281, Percent_Identity=23.1316725978648, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49915; Mature: 49915

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYKQVSIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWG
CCCCEEEEEHHHHHCCCCHHHHCCCCHHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEC
PPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHR
CCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
FNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLILLKRA
HCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHH
LKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA
HCCCCCCCEEEEECCCHHHHHEEEEEECCCCEEEEEEEEEEEECHHHCCCCEEEHHHHHH
DAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPLYVARRMIRF
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAVYVAYNKAKK
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCCCCEEEEEECCHHH
DAEKTIAESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPDNLKDRKYYVPT
HHHHHHHHHCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC
DSGFEKDIQRRLEQITNLKKKGK
CCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEYKQVSIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWG
CCCCEEEEEHHHHHCCCCHHHHCCCCHHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEC
PPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHR
CCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
FNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLILLKRA
HCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHH
LKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA
HCCCCCCCEEEEECCCHHHHHEEEEEECCCCEEEEEEEEEEEECHHHCCCCEEEHHHHHH
DAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPLYVARRMIRF
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAVYVAYNKAKK
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCCCCEEEEEECCHHH
DAEKTIAESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPDNLKDRKYYVPT
HHHHHHHHHCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC
DSGFEKDIQRRLEQITNLKKKGK
CCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]