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The map label for this gene is rbsR [H]

Identifier: 167039769

GI number: 167039769

Start: 1163707

End: 1164681

Strand: Direct

Name: rbsR [H]

Synonym: Teth514_1120

Alternate gene names: 167039769

Gene position: 1163707-1164681 (Clockwise)

Preceding gene: 167039768

Following gene: 167039770

Centisome position: 47.36

GC content: 32.0

Gene sequence:

>975_bases
ATGCCAACTATAAAAGACGTAGCGAAAAAAGCAGGAGTTACTGTTACGACTGTATCAAGGGTCTTAAATAACAGAGGTTA
TATAAGCGAGGTAACGAGAAAAAAAGTCTATGAGGCGATGAAAGAATTAAATTACCAGCCTAACGAATTAGCAAGGTCCT
TATACAGAAAAAAATCCTATTTAATAGGTTTATTAATTCCTAATGTATCACATCCTTTTTTTGCAGAATTGACCGGTTAT
ATAGAATATTATGCTTATCAAGAAGGTTATAAAATTTTGTTGTGCAATTCTGGGCAAGATAGTAGCAAAGAAAAAGGATA
TATAGATATGCTGAAAAGACATCAAGTTGATGGTATAATTATTGGCAGTCATACCTTAGAAGCAGAGCAATATTTAAATG
TGAAACTTCCTATAGTGGCAATTGATAGATATTATTCCAATATACCTTATGTAGCTTCAGACAATTATAAAGGTGGAATT
TTGGCTACAAAACTTTTGATACAAAAGGGATGTAAAAAAATCGCTCACATAAGCGGACCATTGATTTTGAATACACCGGC
TAATAACCGTTATAAAGCGTTTAAAGAGGTAGCAACACAAGAGAATGTTGAGTATTTTGTTGTAGAAACAAAGTTAAATA
GATTTGAAATAGAAGAATATAAAAAAATAGTAAGAGGCCTTTTTAAAGAACATCCAGACATTGATGGTATATTTGCCAGC
AGTGACTTAATCGCTGCTTCTGTAATAAGTGTGGCTAAAGAGTTAAATAAAAAAATACCTCAAGATTTGAAAATTGTAGG
TTATGATGATATAAATGTTGCTAATTTGGTAGTTCCCTCTTTAACAACCGTAAGACAACCAATTAAAGAAATAGCAAGAA
AAGCTATTGAACTGATATTACGCCAAATAGATGGTGAAAAGGTGGAAAAAGAAAATATTTTGCCTATAACTCTGATAGAG
AGGGAGACTACGTAA

Upstream 100 bases:

>100_bases
AAAATCGTTGTAAAATATGCCATTATGAAGACTTTAATTGTAATTACGATAAAGGTATAATAGAAGAGGAGACAAAAAGT
AGTAATAGAAGGTGATAGAC

Downstream 100 bases:

>100_bases
TTTTGACCTCTCTTGACTTTTTTATTCAATTAAATGTATAATTTTATGTGCTGGCCTAAATATTGGCTTAAATGGAATAT
ACCCCTGTATGGTATTTTGA

Product: regulatory protein LacI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MPTIKDVAKKAGVTVTTVSRVLNNRGYISEVTRKKVYEAMKELNYQPNELARSLYRKKSYLIGLLIPNVSHPFFAELTGY
IEYYAYQEGYKILLCNSGQDSSKEKGYIDMLKRHQVDGIIIGSHTLEAEQYLNVKLPIVAIDRYYSNIPYVASDNYKGGI
LATKLLIQKGCKKIAHISGPLILNTPANNRYKAFKEVATQENVEYFVVETKLNRFEIEEYKKIVRGLFKEHPDIDGIFAS
SDLIAASVISVAKELNKKIPQDLKIVGYDDINVANLVVPSLTTVRQPIKEIARKAIELILRQIDGEKVEKENILPITLIE
RETT

Sequences:

>Translated_324_residues
MPTIKDVAKKAGVTVTTVSRVLNNRGYISEVTRKKVYEAMKELNYQPNELARSLYRKKSYLIGLLIPNVSHPFFAELTGY
IEYYAYQEGYKILLCNSGQDSSKEKGYIDMLKRHQVDGIIIGSHTLEAEQYLNVKLPIVAIDRYYSNIPYVASDNYKGGI
LATKLLIQKGCKKIAHISGPLILNTPANNRYKAFKEVATQENVEYFVVETKLNRFEIEEYKKIVRGLFKEHPDIDGIFAS
SDLIAASVISVAKELNKKIPQDLKIVGYDDINVANLVVPSLTTVRQPIKEIARKAIELILRQIDGEKVEKENILPITLIE
RETT
>Mature_323_residues
PTIKDVAKKAGVTVTTVSRVLNNRGYISEVTRKKVYEAMKELNYQPNELARSLYRKKSYLIGLLIPNVSHPFFAELTGYI
EYYAYQEGYKILLCNSGQDSSKEKGYIDMLKRHQVDGIIIGSHTLEAEQYLNVKLPIVAIDRYYSNIPYVASDNYKGGIL
ATKLLIQKGCKKIAHISGPLILNTPANNRYKAFKEVATQENVEYFVVETKLNRFEIEEYKKIVRGLFKEHPDIDGIFASS
DLIAASVISVAKELNKKIPQDLKIVGYDDINVANLVVPSLTTVRQPIKEIARKAIELILRQIDGEKVEKENILPITLIER
ETT

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=342, Percent_Identity=30.7017543859649, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1790194, Length=328, Percent_Identity=31.4024390243902, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1790369, Length=334, Percent_Identity=30.5389221556886, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788474, Length=332, Percent_Identity=31.0240963855422, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789202, Length=332, Percent_Identity=30.421686746988, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787580, Length=326, Percent_Identity=29.7546012269939, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789068, Length=335, Percent_Identity=26.865671641791, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1790715, Length=307, Percent_Identity=25.7328990228013, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1786540, Length=342, Percent_Identity=25.1461988304094, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI48994940, Length=315, Percent_Identity=27.3015873015873, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1786268, Length=323, Percent_Identity=26.0061919504644, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787906, Length=336, Percent_Identity=25.297619047619, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790689, Length=322, Percent_Identity=22.0496894409938, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790192, Length=281, Percent_Identity=21.7081850533808, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789993, Length=234, Percent_Identity=26.4957264957265, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36731; Mature: 36600

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTIKDVAKKAGVTVTTVSRVLNNRGYISEVTRKKVYEAMKELNYQPNELARSLYRKKSY
CCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LIGLLIPNVSHPFFAELTGYIEYYAYQEGYKILLCNSGQDSSKEKGYIDMLKRHQVDGII
EEEEEECCCCCHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEE
IGSHTLEAEQYLNVKLPIVAIDRYYSNIPYVASDNYKGGILATKLLIQKGCKKIAHISGP
EECCEECHHHHCCEEEEEEEEEHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
LILNTPANNRYKAFKEVATQENVEYFVVETKLNRFEIEEYKKIVRGLFKEHPDIDGIFAS
EEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEECC
SDLIAASVISVAKELNKKIPQDLKIVGYDDINVANLVVPSLTTVRQPIKEIARKAIELIL
CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RQIDGEKVEKENILPITLIERETT
HHHCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
PTIKDVAKKAGVTVTTVSRVLNNRGYISEVTRKKVYEAMKELNYQPNELARSLYRKKSY
CCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LIGLLIPNVSHPFFAELTGYIEYYAYQEGYKILLCNSGQDSSKEKGYIDMLKRHQVDGII
EEEEEECCCCCHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEE
IGSHTLEAEQYLNVKLPIVAIDRYYSNIPYVASDNYKGGILATKLLIQKGCKKIAHISGP
EECCEECHHHHCCEEEEEEEEEHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
LILNTPANNRYKAFKEVATQENVEYFVVETKLNRFEIEEYKKIVRGLFKEHPDIDGIFAS
EEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEECC
SDLIAASVISVAKELNKKIPQDLKIVGYDDINVANLVVPSLTTVRQPIKEIARKAIELIL
CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RQIDGEKVEKENILPITLIERETT
HHHCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]