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The map label for this gene is amyD [H]

Identifier: 167039765

GI number: 167039765

Start: 1159372

End: 1160262

Strand: Direct

Name: amyD [H]

Synonym: Teth514_1116

Alternate gene names: 167039765

Gene position: 1159372-1160262 (Clockwise)

Preceding gene: 167039764

Following gene: 167039766

Centisome position: 47.18

GC content: 32.32

Gene sequence:

>891_bases
ATGAGTGTGGAACAAGAAAAAACTTTGTTGGCTAAACTCAAAACGTACTTGATATTTGCAGGACCTACTACCTTTGCTTT
TCTCACAGTAATAATACTACCGTTTTTATATGGAATATATTTAACTTTTACTGATTGGAATGGTATTTCTGCTACACATG
CTTTTGTAGGTTTTTCAAATTATTTACAAGTATTTAAAGATAAAGTATTTTGGACATCTTTTTTATTGACACTAAAATAT
GTATTTTTCACAGTAATATTAATTAATGTCATAGCTTTTTTCTTGGCTTATATGTTAACGAGTGGCGTAAAAGGCCAAAA
TTTCTTTAGAGCAGGGTTTTTTACTCCCAATTTGATAGGCGGAATATTGTTAGGTTTTATATGGCAATTTATTTTTTCAA
ACATTTTAGTATATTTAGGAAAATCATATAATATACCAATTTTGTCAGGCTCTTGGTTGTCAGATCCTGACAAAGCTTTT
TGGGCTTTGGTGATTGTGACAGTCTGGCAGTATACTGGTTATATGATGGTGATATATATTTCAGGTTTTATGAATATACC
GAGAGATTTGTTAGAAGCAGCAAGTATAGACGGAGCAAATACTTATCAAAGACTAAAAAATGTGATACTTCCATTAATGG
TGCCTTCTTTTACTATAAGTGTTTTTTTGACTTTACAAAGAGGGTTTATGGTTTACGATATAAACTTGGCTTTGACAAAT
GGAGGACCATATAAAAGCACCGAACTCATATCACTTCACATATATAACACTGCTTTTTTAAGTCAGCAGTATGGTATTGG
TCAAGCAGAGGCGTTTTTTCTCTTTTTTGTGGTAGCGGCTGTCACGTTGCTTCAAGTGTATTTTAGCAAAAAGCTGGAGG
TGGAAAATTGA

Upstream 100 bases:

>100_bases
AAAATTATTGGAAAAATGTTCAATAATACGTAAGATTTGATTGAATAACGGATAGAATGTTATTGTCTATCCGTTATTCA
ATATAAAAGTGAAGGAGGAT

Downstream 100 bases:

>100_bases
TGGAAAAGAATAATCGCCTACTTGGTGGAATAAAATTTTTTGCTTTAAGTATTTTTTTGGTACTTTATATATTTCCATTT
TTTATAGTTTTAATTAATTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSVEQEKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSNYLQVFKDKVFWTSFLLTLKY
VFFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIGGILLGFIWQFIFSNILVYLGKSYNIPILSGSWLSDPDKAF
WALVIVTVWQYTGYMMVIYISGFMNIPRDLLEAASIDGANTYQRLKNVILPLMVPSFTISVFLTLQRGFMVYDINLALTN
GGPYKSTELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVEN

Sequences:

>Translated_296_residues
MSVEQEKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSNYLQVFKDKVFWTSFLLTLKY
VFFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIGGILLGFIWQFIFSNILVYLGKSYNIPILSGSWLSDPDKAF
WALVIVTVWQYTGYMMVIYISGFMNIPRDLLEAASIDGANTYQRLKNVILPLMVPSFTISVFLTLQRGFMVYDINLALTN
GGPYKSTELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVEN
>Mature_295_residues
SVEQEKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSNYLQVFKDKVFWTSFLLTLKYV
FFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIGGILLGFIWQFIFSNILVYLGKSYNIPILSGSWLSDPDKAFW
ALVIVTVWQYTGYMMVIYISGFMNIPRDLLEAASIDGANTYQRLKNVILPLMVPSFTISVFLTLQRGFMVYDINLALTNG
GPYKSTELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVEN

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=242, Percent_Identity=26.8595041322314, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787570, Length=235, Percent_Identity=28.0851063829787, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790465, Length=255, Percent_Identity=25.8823529411765, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33612; Mature: 33481

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEQEKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSN
CCCCHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHH
YLQVFKDKVFWTSFLLTLKYVFFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH
GILLGFIWQFIFSNILVYLGKSYNIPILSGSWLSDPDKAFWALVIVTVWQYTGYMMVIYI
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE
SGFMNIPRDLLEAASIDGANTYQRLKNVILPLMVPSFTISVFLTLQRGFMVYDINLALTN
HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEC
GGPYKSTELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVEN
CCCCCCCEEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVEQEKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSN
CCCHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHH
YLQVFKDKVFWTSFLLTLKYVFFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH
GILLGFIWQFIFSNILVYLGKSYNIPILSGSWLSDPDKAFWALVIVTVWQYTGYMMVIYI
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE
SGFMNIPRDLLEAASIDGANTYQRLKNVILPLMVPSFTISVFLTLQRGFMVYDINLALTN
HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEC
GGPYKSTELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVEN
CCCCCCCEEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]