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The map label for this gene is xylR [H]

Identifier: 167039738

GI number: 167039738

Start: 1125183

End: 1126373

Strand: Direct

Name: xylR [H]

Synonym: Teth514_1089

Alternate gene names: 167039738

Gene position: 1125183-1126373 (Clockwise)

Preceding gene: 167039737

Following gene: 167039739

Centisome position: 45.79

GC content: 35.77

Gene sequence:

>1191_bases
ATGGAAAACTTAATACCAGTCAGCTACAAATTGTTAAAAGGAATGAACGAATCAGTTATATTAAATATCATAAGAAAAAT
GGGACCTATTTCAAGAGCGGATATTGCCAAAGAGACAAATTTAACGCCGCCGACTGTGACTAACATTGTAAACAAACTCA
TTGCTGAAAATATTGTGATGGAGTACAAAGTTGGCGAATCAAATGGTGGAAGGCCTCCTGTACTTATCAAATTAAATCCT
GACTTTATGAGTATTATTGTCATTCATATAAGCACTTACAACTTACATCAATATACTCTTGACGCAGAACTTAAAACAAA
AAAGAAAGAGAAGAATTCTATTAGAGGTTTAAAGCAAGAAGAAGTTTTAGAATTGTTGACATCTGTTCTTGATAAAGCAA
TAAAAGTATCTCCACAAAATGTATCGGGGATAGGAATTGTGGTTAGAGGACCTGTAAAAATGAAAGAAGGTATATCTGTA
TTTGCTCCCAATATAGGGTGGAGAAATGTGCCTTTAAAATCAATTGTAGAAGAAAAATTTGGTGTACCTACCTATGTTAT
AAATGACGTGCGAGCTATGGCTTTAGGAGAATTTCACATGGGCAAAGCAAAAGACGTTGAAAATATGATATTTTTAAAGG
TTGGCTATGGAATAGGTTCAGCAATACTTATAAATGGCAGGATATATACTGGAGCCAGTGACGGTGCGGGTGAAATAGGG
CATACAACTATTGATGTAGCAGGGCCACAATGTAGTTGCGGCAATTACGGTTGTTTTGAAGCATTGGCTTCAGAGAAAGC
CTTAGTGAATTTAGTTGTTAAATCTATTAAAGAGGGTATGGATTCTATTGTGTATCAAATGGCAGAAGGGATGTTAGACA
GTGTTACTCCTGAGATGATATACGAGGCAGCAAAACTAAACGATAAATTAGCAGTCAATGCTTTAAAAACTATAGGAAGA
TATTTAGGAATAGGTATAGCCAATACAATAAATACATTTAACCCAGAGCTCATTTTGATAGGGGGAGGGATTGTGCAGGC
ACGTGAGCTTATTGAAGATATCATCATAGAAACTGCTAAAAAACGCACTTTTGAGAATTCATTTTCTTCCTGCAGAATAG
CTTTTGCTGAATTAGGTGATGATGCTACACTCATCGGTGCTGCCAATATGGTCATGGATGAAGTATTGTAA

Upstream 100 bases:

>100_bases
TGCCAAAACATCCATCTTTAGAAGAAATAATTGAAAGTGCTTGGATGTGGCACAAAAATCATCCAAATGGCTTTAAGAGA
GGGTAAAGGAAGGGGTATAA

Downstream 100 bases:

>100_bases
CCCATCTCTGTTATTCTGAGCGCAGCGAAGAATCTTACCTACTGAGGTAGTGAAAAAAATAAAAAATTATGCAGAAAGGA
ATGAAAATAGTATGGCAATA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLIAENIVMEYKVGESNGGRPPVLIKLNP
DFMSIIVIHISTYNLHQYTLDAELKTKKKEKNSIRGLKQEEVLELLTSVLDKAIKVSPQNVSGIGIVVRGPVKMKEGISV
FAPNIGWRNVPLKSIVEEKFGVPTYVINDVRAMALGEFHMGKAKDVENMIFLKVGYGIGSAILINGRIYTGASDGAGEIG
HTTIDVAGPQCSCGNYGCFEALASEKALVNLVVKSIKEGMDSIVYQMAEGMLDSVTPEMIYEAAKLNDKLAVNALKTIGR
YLGIGIANTINTFNPELILIGGGIVQARELIEDIIIETAKKRTFENSFSSCRIAFAELGDDATLIGAANMVMDEVL

Sequences:

>Translated_396_residues
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLIAENIVMEYKVGESNGGRPPVLIKLNP
DFMSIIVIHISTYNLHQYTLDAELKTKKKEKNSIRGLKQEEVLELLTSVLDKAIKVSPQNVSGIGIVVRGPVKMKEGISV
FAPNIGWRNVPLKSIVEEKFGVPTYVINDVRAMALGEFHMGKAKDVENMIFLKVGYGIGSAILINGRIYTGASDGAGEIG
HTTIDVAGPQCSCGNYGCFEALASEKALVNLVVKSIKEGMDSIVYQMAEGMLDSVTPEMIYEAAKLNDKLAVNALKTIGR
YLGIGIANTINTFNPELILIGGGIVQARELIEDIIIETAKKRTFENSFSSCRIAFAELGDDATLIGAANMVMDEVL
>Mature_396_residues
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLIAENIVMEYKVGESNGGRPPVLIKLNP
DFMSIIVIHISTYNLHQYTLDAELKTKKKEKNSIRGLKQEEVLELLTSVLDKAIKVSPQNVSGIGIVVRGPVKMKEGISV
FAPNIGWRNVPLKSIVEEKFGVPTYVINDVRAMALGEFHMGKAKDVENMIFLKVGYGIGSAILINGRIYTGASDGAGEIG
HTTIDVAGPQCSCGNYGCFEALASEKALVNLVVKSIKEGMDSIVYQMAEGMLDSVTPEMIYEAAKLNDKLAVNALKTIGR
YLGIGIANTINTFNPELILIGGGIVQARELIEDIIIETAKKRTFENSFSSCRIAFAELGDDATLIGAANMVMDEVL

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI4885285, Length=275, Percent_Identity=30.1818181818182, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI298566315, Length=275, Percent_Identity=30.1818181818182, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI190014632, Length=275, Percent_Identity=30.1818181818182, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI298566325, Length=275, Percent_Identity=30.1818181818182, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI298566312, Length=164, Percent_Identity=31.7073170731707, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI1786891, Length=392, Percent_Identity=30.6122448979592, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787878, Length=382, Percent_Identity=24.0837696335079, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87082127, Length=393, Percent_Identity=23.1552162849873, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87082230, Length=263, Percent_Identity=25.4752851711027, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43018; Mature: 43018

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLIAENIVM
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHEE
EYKVGESNGGRPPVLIKLNPDFMSIIVIHISTYNLHQYTLDAELKTKKKEKNSIRGLKQE
EEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHH
EVLELLTSVLDKAIKVSPQNVSGIGIVVRGPVKMKEGISVFAPNIGWRNVPLKSIVEEKF
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHCCCEEEECCCCCCCCCHHHHHHHHH
GVPTYVINDVRAMALGEFHMGKAKDVENMIFLKVGYGIGSAILINGRIYTGASDGAGEIG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEECCEEEECCCCCCCCCC
HTTIDVAGPQCSCGNYGCFEALASEKALVNLVVKSIKEGMDSIVYQMAEGMLDSVTPEMI
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YEAAKLNDKLAVNALKTIGRYLGIGIANTINTFNPELILIGGGIVQARELIEDIIIETAK
HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
KRTFENSFSSCRIAFAELGDDATLIGAANMVMDEVL
HHHHHCCHHHHEEEHHHCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLIAENIVM
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHEE
EYKVGESNGGRPPVLIKLNPDFMSIIVIHISTYNLHQYTLDAELKTKKKEKNSIRGLKQE
EEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHH
EVLELLTSVLDKAIKVSPQNVSGIGIVVRGPVKMKEGISVFAPNIGWRNVPLKSIVEEKF
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHCCCEEEECCCCCCCCCHHHHHHHHH
GVPTYVINDVRAMALGEFHMGKAKDVENMIFLKVGYGIGSAILINGRIYTGASDGAGEIG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEECCEEEECCCCCCCCCC
HTTIDVAGPQCSCGNYGCFEALASEKALVNLVVKSIKEGMDSIVYQMAEGMLDSVTPEMI
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YEAAKLNDKLAVNALKTIGRYLGIGIANTINTFNPELILIGGGIVQARELIEDIIIETAK
HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
KRTFENSFSSCRIAFAELGDDATLIGAANMVMDEVL
HHHHHCCHHHHEEEHHHCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA