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The map label for this gene is stc [H]

Identifier: 167039406

GI number: 167039406

Start: 776656

End: 778386

Strand: Reverse

Name: stc [H]

Synonym: Teth514_0750

Alternate gene names: 167039406

Gene position: 778386-776656 (Counterclockwise)

Preceding gene: 167039410

Following gene: 167039404

Centisome position: 31.68

GC content: 38.99

Gene sequence:

>1731_bases
ATGGAAAAGCTTTTATCGCTGTCTGGTGACTATGGTTTCCTCGCAGTTTTAGTAGGAGAGGACGGTTATATATTAGAGAC
ATTAGGGAACCACCAAGAAACTATAGACCTAGCTCGAAGAACCAATTTCATTCCTGGCGCATGCTGGCGAGAAGATAAAG
TTGGCACTAATGGTATAGGAACTGCAATGGTTATAGGGCAAGCCCTTGATGTAACTGGGGCTGAACACTTCTCTCGCGGA
CTTCACTCTTGGACATGTACTGGTTCTCCAATTTTTAGTCCGGAAGGAAAACCTATTGGAGTTATTGATCTTTCGGGACC
TTGGTACCGAGAAAACAAACTGGCATTAGCTACTATAGTATCTTCTGCAATTGCGATTGAAAACAATTTGAAGCAGAGTA
AAGCCTTTAAAGAAACTTTAACTTACAGACAACTCTCAGAATACTTCTTAGAAAACAACAGTGATCCCTTATTAGTGATG
GATAATACAGGAAGATTAATCAAGGTTAATTATGCATCTGAGAAAGTTTTGGGATGGAAAAAAGAAGATTTAATAGGACG
AAGAGCTGATGAAATATTTGACAATTCGCAGGAAATCCTATTCCTCATAAAAGCGCGGCAGAGTATAAAAGGCAAGGAAA
TATTAGTGCAAAGTAAAAAAGGTATCTTGCGGTGTAGCGCAGATGTTTCACCTATAAGTGGTTATTACAATGAAAATGTA
GCGGCTCTAATAGCTCTAAAAATGCATGAAGGTAGTCAATTTTATATAAGCTCTCCTCCAGCTTTAAAAGGATTCGAAGT
AATATTAGGAAATCATCCCTGTTTGCGTGAAAGTATACGATTAGCCCAAATTGCAGCAAATAGCGATGCACCAGTCCTTA
TTTTAGGAGAGACAGGGACAGGGAAAGACCTTTTTGCAAGAGCCATTCATGAGGCTAGCGGTAGGAAAGGACCTTTTGTG
GCGATAAATGGTGGTGCTTTGCCGCGAGAATTAATTGGAAGTGAGCTTTTCGGCTATGTAGGCGGAGCTTTTACCGGTGC
ACGACCAGAGGGCAAGCCAGGTAAATTTGAACAAGCACAAGGAGGTACTTTATTTTTAGACGAAATAGGCGATATGCCTA
TGGATATACAGGTTTACCTTTTACGAGTGTTAGAAGAAAAAAAGGTAGTTCGAATAGGCGGGCATAAGGAGATACCGTTA
GATGTTCGAATTATTGCTGCGACCAATTCGGATTTAACGAAGTTAGTAAGAGAGAAAAAATTCCGAGAGGATTTGTATTT
TCGCCTGAGAGTTCTCACTATTCATTTATGCCCGTTACGAGAACGCAAAAGTGATATACCTCTTCTTTTTCAACATTTTA
TTCATAAATTTTCACAAAAATTAGGTAAAAATATTACCAATATTGATCCATCAATTTGGCCTTTATTAGGGAATTATGAC
TGGCCAGGGAATATTAGGGAATTACGAAATGTGGCAGAATGGGCAGTGAATATAGCAGAGGTTAATACAATTTCTGTTAG
TCATTTGCCGTCTTACTTATCTGGTTCTCAAACTATCCGCGAGAACAGTAATAGCTTTTCTTCTACCTCTCTTATTGAAC
TGGAAAAGCAGGAGATTAGTCAACTTCTCGAACATTATGGAGGTAATATAACTAAAGTTGCTAAAGCCTTAGGCATAGCA
CGGAACACCTTGTATAGGAAGCTTTATAAATATGGACTAAAGACTCGTTAG

Upstream 100 bases:

>100_bases
CGATCCGTACCAGGAACAAGGACAAGAAATTATCGAGGGTGCCGCTTTAAAAGAAGTCAGAGAAAAACAAGAAGAACTAA
TTCAAGCTGCTAGGCCGATT

Downstream 100 bases:

>100_bases
GGTGTTCCAAAATCTAACGTTACAAGAGGAGACATAAGTTACAAAGAAGCAGATTAAAATTTCATAATTTCTTGTAAAAA
TCAAGAGATGAATCGAGTAG

Product: Fis family GAF modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 576

Protein sequence:

>576_residues
MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIGTAMVIGQALDVTGAEHFSRG
LHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIVSSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVM
DNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV
AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRKGPFV
AINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPL
DVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYD
WPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSLIELEKQEISQLLEHYGGNITKVAKALGIA
RNTLYRKLYKYGLKTR

Sequences:

>Translated_576_residues
MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIGTAMVIGQALDVTGAEHFSRG
LHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIVSSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVM
DNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV
AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRKGPFV
AINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPL
DVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYD
WPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSLIELEKQEISQLLEHYGGNITKVAKALGIA
RNTLYRKLYKYGLKTR
>Mature_576_residues
MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIGTAMVIGQALDVTGAEHFSRG
LHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIVSSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVM
DNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV
AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRKGPFV
AINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPL
DVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYD
WPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSLIELEKQEISQLLEHYGGNITKVAKALGIA
RNTLYRKLYKYGLKTR

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=448, Percent_Identity=36.1607142857143, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI1788550, Length=313, Percent_Identity=46.3258785942492, Blast_Score=255, Evalue=7e-69,
Organism=Escherichia coli, GI1790299, Length=331, Percent_Identity=41.9939577039275, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1790437, Length=304, Percent_Identity=44.4078947368421, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI87082117, Length=307, Percent_Identity=44.6254071661238, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1789087, Length=316, Percent_Identity=43.6708860759494, Blast_Score=238, Evalue=6e-64,
Organism=Escherichia coli, GI1788905, Length=313, Percent_Identity=41.5335463258786, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI1786524, Length=319, Percent_Identity=42.0062695924765, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1787583, Length=433, Percent_Identity=31.8706697459584, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI87081858, Length=566, Percent_Identity=28.9752650176678, Blast_Score=209, Evalue=6e-55,
Organism=Escherichia coli, GI87082152, Length=326, Percent_Identity=36.8098159509202, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI87081872, Length=231, Percent_Identity=44.5887445887446, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1789828, Length=299, Percent_Identity=33.4448160535117, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 63930; Mature: 63930

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIG
CCCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
TAMVIGQALDVTGAEHFSRGLHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIV
HHHHHHHHHCCCCHHHHHCCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCHHHHHH
SSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVMDNTGRLIKVNYASEKVLGWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCHHCCCC
KEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV
HHHHHCCHHHHHHCCCCCEEEEEEHHHCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCE
AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGT
EEEEEEEEECCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHEECCCCCCEEEEECCCC
GKDLFARAIHEASGRKGPFVAINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQ
CHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKK
CCEEEEHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHH
FREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYD
HHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
WPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSLIELEKQEIS
CCCCHHHHHHHHHHHHHHHHEEEEEHHHCCHHHCCCHHHHCCCCCCCCCHHEEECHHHHH
QLLEHYGGNITKVAKALGIARNTLYRKLYKYGLKTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIG
CCCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
TAMVIGQALDVTGAEHFSRGLHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIV
HHHHHHHHHCCCCHHHHHCCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCHHHHHH
SSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVMDNTGRLIKVNYASEKVLGWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCHHCCCC
KEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV
HHHHHCCHHHHHHCCCCCEEEEEEHHHCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCE
AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGT
EEEEEEEEECCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHEECCCCCCEEEEECCCC
GKDLFARAIHEASGRKGPFVAINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQ
CHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKK
CCEEEEHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHH
FREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYD
HHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
WPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSLIELEKQEIS
CCCCHHHHHHHHHHHHHHHHEEEEEHHHCCHHHCCCHHHHCCCCCCCCCHHEEECHHHHH
QLLEHYGGNITKVAKALGIARNTLYRKLYKYGLKTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA