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The map label for this gene is ypdB [H]

Identifier: 167039159

GI number: 167039159

Start: 512059

End: 512769

Strand: Direct

Name: ypdB [H]

Synonym: Teth514_0498

Alternate gene names: 167039159

Gene position: 512059-512769 (Clockwise)

Preceding gene: 167039158

Following gene: 167039160

Centisome position: 20.84

GC content: 31.22

Gene sequence:

>711_bases
ATGTTAAGAATAGTTATTGCAGAAGACGATATAAATTTTAAAAAAGAACTCATAAAAATTCTTTTAACAATGGAAGGCGT
AAGTGTTGAATATTCTACAGGAGACGGAAATGACGCATTAGAAGCATTAATTAAAATTAAACCGGACGTTGCTATTTTAG
ATATAGGATTACCAGGAATATCGGGCATTGAGGTGGCGAAAAAGATTAGAGAATACATGCCTTTTTTGGAAATAATTTTT
ATTACGTCCTTTGAGGAATACATAAAAGATGCTGTGAGACTTTATGCTTCTGATTATATTGAGAAGCCTCTTGATGAGAA
GAGGCTGAGAGAAACTTTGGATAGGATAAAGAAAAAACTTTTGGAAGTAGAAAATGTCATCCCTTTTAAGACGGAAGATG
GAGTAAAGCTTATCAATCCAAAGGAAATTTATTGTGTTCAAGCCAGTAAAAAAAGGAGCATAGTTTATACCCAAAAAGAA
AAATTTATATGTGATTATTCTTTAAAAGAAATAGAGGAATTGTTAGATAGTAGCATGTTTTTTAGAACAAATCGATCTTT
TCTAGTGAACCTCTTTAAAGTTGAGCTGTTGAAAGATAACAATAGGACTTCCTTTGAGATACGTCTTAAAGGTTCAAATT
ATAAGGCTTATCTCTCTAAAGAATTGTATGAAGAATTTAGGAGGAGAGTAAAAGCTATTTACAAATCATAG

Upstream 100 bases:

>100_bases
TTTTTTACCCCAATTATTAACAGCAATTTTGATTTCTTTTGCTATACGCAAATATAAACTTTATTTATTTACAGAGTAAT
GCATTGGGAGATGAATTTAT

Downstream 100 bases:

>100_bases
TTAGATTGGAAGAGGTTTTATGTTTAAGGATAGTTACAAAAATGCGATGATGATTTATGTAGTGCAAATGGTATTGATAG
TAATACTAGTAAACAACAAT

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLRIVIAEDDINFKKELIKILLTMEGVSVEYSTGDGNDALEALIKIKPDVAILDIGLPGISGIEVAKKIREYMPFLEIIF
ITSFEEYIKDAVRLYASDYIEKPLDEKRLRETLDRIKKKLLEVENVIPFKTEDGVKLINPKEIYCVQASKKRSIVYTQKE
KFICDYSLKEIEELLDSSMFFRTNRSFLVNLFKVELLKDNNRTSFEIRLKGSNYKAYLSKELYEEFRRRVKAIYKS

Sequences:

>Translated_236_residues
MLRIVIAEDDINFKKELIKILLTMEGVSVEYSTGDGNDALEALIKIKPDVAILDIGLPGISGIEVAKKIREYMPFLEIIF
ITSFEEYIKDAVRLYASDYIEKPLDEKRLRETLDRIKKKLLEVENVIPFKTEDGVKLINPKEIYCVQASKKRSIVYTQKE
KFICDYSLKEIEELLDSSMFFRTNRSFLVNLFKVELLKDNNRTSFEIRLKGSNYKAYLSKELYEEFRRRVKAIYKS
>Mature_236_residues
MLRIVIAEDDINFKKELIKILLTMEGVSVEYSTGDGNDALEALIKIKPDVAILDIGLPGISGIEVAKKIREYMPFLEIIF
ITSFEEYIKDAVRLYASDYIEKPLDEKRLRETLDRIKKKLLEVENVIPFKTEDGVKLINPKEIYCVQASKKRSIVYTQKE
KFICDYSLKEIEELLDSSMFFRTNRSFLVNLFKVELLKDNNRTSFEIRLKGSNYKAYLSKELYEEFRRRVKAIYKS

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=242, Percent_Identity=28.5123966942149, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI87082052, Length=220, Percent_Identity=26.8181818181818, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27638; Mature: 27638

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIVIAEDDINFKKELIKILLTMEGVSVEYSTGDGNDALEALIKIKPDVAILDIGLPGI
CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCC
SGIEVAKKIREYMPFLEIIFITSFEEYIKDAVRLYASDYIEKPLDEKRLRETLDRIKKKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LEVENVIPFKTEDGVKLINPKEIYCVQASKKRSIVYTQKEKFICDYSLKEIEELLDSSMF
HHHHHCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEECCCEEECCCHHHHHHHHCCHHE
FRTNRSFLVNLFKVELLKDNNRTSFEIRLKGSNYKAYLSKELYEEFRRRVKAIYKS
EECCHHHHHHHHHHEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRIVIAEDDINFKKELIKILLTMEGVSVEYSTGDGNDALEALIKIKPDVAILDIGLPGI
CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCC
SGIEVAKKIREYMPFLEIIFITSFEEYIKDAVRLYASDYIEKPLDEKRLRETLDRIKKKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LEVENVIPFKTEDGVKLINPKEIYCVQASKKRSIVYTQKEKFICDYSLKEIEELLDSSMF
HHHHHCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEECCCEEECCCHHHHHHHHCCHHE
FRTNRSFLVNLFKVELLKDNNRTSFEIRLKGSNYKAYLSKELYEEFRRRVKAIYKS
EECCHHHHHHHHHHEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]