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The map label for this gene is ykfC [H]

Identifier: 167039148

GI number: 167039148

Start: 501819

End: 503231

Strand: Direct

Name: ykfC [H]

Synonym: Teth514_0487

Alternate gene names: 167039148

Gene position: 501819-503231 (Clockwise)

Preceding gene: 167039147

Following gene: 167039149

Centisome position: 20.42

GC content: 37.51

Gene sequence:

>1413_bases
ATGGACTCGAAAGATATGCAGAGACTGCAGACAACTCAACAAAGAGGCTATCCGTTGAATAGAGAAATGGAATTTCAAAA
GACAACGGAAGTGCATAGTATATCATCGGCGTCGGAAGATGGAAGAAACGAGGTACAAAGATATACCGGCAAGATGCTTG
AAATGATAGTAGAACGAGGGAACATGGAAGCAGCATACAAGCGCGTTGTTGCAAATAAAGGAAGCCATGGAGTCGATGGG
ATGGAAGTAGATGAACTTCTACCGTATCTCAAAGAAAACTGGCCAACCATAAAACAACAACTGCTGGAGGGGAAATACAA
ACCACAACCAGTGCGAAGAGTAGAAATTCCCAAACCAGATGGAGGAGTAAGACTACTAGGAATACCTACAGCACTAGATA
GGTTAATACAACAAGCAATAGCCCAAATACTAAATAGAGTCTACAACCATACATTTTCTGATAGCAGTTATGGATTCAGA
CCAGGACGCAGTGCAAAAGACGCAATAAAAGCCGCAGAAGCATATATAAATGAAGGATATACATGGGTTGTAGATATGGA
CTTAGAAAAGTTCTTTGACAGAGTAAACCACGACATAATAATGTCCAAACTAGAAAAGCGGATAGGAGACAAAAGAGTAC
TAAAGTTAATAAGAAGATACTTAGAATCAGGAGTAATGATAAACGGAGTCAAAGTATCAACAGAAGAAGGGACACCCCAA
GGAGGGCCATTAAGTCCCCTATTAGCAAACATAATGTTGGACGAACTAGACAAAGAACTTGAGAAACGAGGGCATAAATT
CTGCCGATATGCAGATGACTGCAACATATATGTAAAAAGCAGGTCTGCAGGAAACAGAGTAATGAAGAGCATAAAGAAAT
TCATAGAAAGCAAATTAAAACTAAAAGTCAACGAAGCAAAAAGTGCTGTAGATAGACCATGGAGAAGAAAATTTCTTGGA
TTTTCATTCTACACAAAAGAAAACGAAGTAAGAATAAGAATCCATGAAAAATCCATCAAAAGGTTTAAGGAAAAAGTAAG
AGAAATAACCAATCGGAACAAGGGAATAAGCATGGAAAACAGAATAAAAAGACTAAATCAAATAACAACAGGATGGGTCA
ACTATTTTGGATTAGCAGACGCGAAAAGCATAATGAAAACCCTTGACGAATGGATAAGGCGAAGACTAAGGGCATGTATA
TGGAAACAATGGAAGAAGATAAAAACGAAGCATGATAACTTAGTAAAACTAGGAGTAGAAGATCAAAAAGCCTGGGAATA
CGCCAATACAAGGAAAGGCTACTGGAGAATATCCAATAGCCCAATCCTAAATAAGACTCTTACAAATAAATACTTTGAAA
GCATAGGTTATAAGAGTTTATCCCAAAGATATCTAATTGTACATAAATCCTAA

Upstream 100 bases:

>100_bases
GATGTATGGCTGAACCTTGAGAAGTCAGCAGAGGTCATAGTACTTATCTAGTCATGAATAGATAAGGAAGGACCGAACGT
TAGGAGGTTTTGGAAATCTT

Downstream 100 bases:

>100_bases
TGAACCGCCGTATACCGAACGGTACGTACGGTGGTGTGAGAGGACGCTGAATAAAATAATTATTCAGCTCCTACTCGATT
TTTAATTTGTTAAAAGATAG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASEDGRNEVQRYTGKMLEMIVERGNMEAAYKRVVANKGSHGVDG
MEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKVNEAKSAVDRPWRRKFLG
FSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMENRIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACI
WKQWKKIKTKHDNLVKLGVEDQKAWEYANTRKGYWRISNSPILNKTLTNKYFESIGYKSLSQRYLIVHKS

Sequences:

>Translated_470_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASEDGRNEVQRYTGKMLEMIVERGNMEAAYKRVVANKGSHGVDG
MEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKVNEAKSAVDRPWRRKFLG
FSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMENRIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACI
WKQWKKIKTKHDNLVKLGVEDQKAWEYANTRKGYWRISNSPILNKTLTNKYFESIGYKSLSQRYLIVHKS
>Mature_470_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASEDGRNEVQRYTGKMLEMIVERGNMEAAYKRVVANKGSHGVDG
MEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKVNEAKSAVDRPWRRKFLG
FSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMENRIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACI
WKQWKKIKTKHDNLVKLGVEDQKAWEYANTRKGYWRISNSPILNKTLTNKYFESIGYKSLSQRYLIVHKS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=240, Percent_Identity=32.0833333333333, Blast_Score=133, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=32.1951219512195, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 54868; Mature: 54868

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASEDGRNEVQRYTGKMLEMIVERG
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
NMEAAYKRVVANKGSHGVDGMEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
LKVNEAKSAVDRPWRRKFLGFSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMEN
HHHHHHHHHHCCHHHHHHHCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
RIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACIWKQWKKIKTKHDNLVKLGVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
DQKAWEYANTRKGYWRISNSPILNKTLTNKYFESIGYKSLSQRYLIVHKS
HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCHHHHCCCEEEEECC
>Mature Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASEDGRNEVQRYTGKMLEMIVERG
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
NMEAAYKRVVANKGSHGVDGMEVDELLPYLKENWPTIKQQLLEGKYKPQPVRRVEIPKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGVKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
LKVNEAKSAVDRPWRRKFLGFSFYTKENEVRIRIHEKSIKRFKEKVREITNRNKGISMEN
HHHHHHHHHHCCHHHHHHHCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
RIKRLNQITTGWVNYFGLADAKSIMKTLDEWIRRRLRACIWKQWKKIKTKHDNLVKLGVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
DQKAWEYANTRKGYWRISNSPILNKTLTNKYFESIGYKSLSQRYLIVHKS
HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]