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The map label for this gene is ydcI [H]

Identifier: 167039140

GI number: 167039140

Start: 491827

End: 493965

Strand: Direct

Name: ydcI [H]

Synonym: Teth514_0479

Alternate gene names: 167039140

Gene position: 491827-493965 (Clockwise)

Preceding gene: 167039139

Following gene: 167039141

Centisome position: 20.02

GC content: 35.11

Gene sequence:

>2139_bases
ATGAATAGGATAAAAGATATATTAAAGAAAGAATTTGGATTAAAAGACTTTCAAGTGGAAAATACAATAAAGCTTATTGA
TGAAGGGAATACAATTCCTTTTATTGCAAGGTACAGGAAAGAAGCAACAGGAAGCTTGTCAGATGAGGTTTTAAGAAATT
TTTATGACCGACTTACATATTTGAGAAACCTTGAAGAGAAGAAACAGGATACTATAAGGTTAATTGATGAACAGGGAAAA
CTGACAGAGGAGATAAAAGCAAAAATAGAAAATGCTACAACTTTACAAGAAGTAGAGGACATATACAGGCCTTTTAGGCC
AAAAAGAAGGACAAGGGCGACCATTGCGAAAGAAAAAGGCTTGGAACCTCTTGCAAAGGTTATTTCTTCAAATGATGTAA
CAGATGGGGATGTAGAAGAATACGCAAAGCCTTATCTTAATGAAAATGTTCCAACAGTTGAAGAAGCATACCAAGGAGCA
ATGGATATAATTGCAGAGGATATATCTGATGACGCTGATATAAGGAAATACATAAGGAGTTTTACATGGAATAACGGAAT
TATAGTGACACAGGCATTAAAAGAGGATAGGTCTCCTTATGAGATGTATTATGACTATAAAGAAGCTGTAAAGACAATAC
CGCCTCATAGAATACTGGCGATAAACAGGGCAGAAAGGGAAAAATACATATCTGTAAAAATTGAGATAGATAGTGAAAGG
ATAATAAATAGGCTTATAGAATCAAAAGTAAATAAAGCTTCAATATTTGCAGAGTATTACAAGAAAGCAATTGAAGATTC
CTACAAAAGGCTTATTGCGCCTTCAATAGAGAGAGAGATAAGGAATGCTCTTACGGAAAAAGCAGAAGAAAAGGCAATAA
TAGTTTTTAAAGAAAATCTAAAAAGCCTTTTACTTCAACCCCCAATAAAAGGACATGTTGTCATGGGATTTGACCCAGCC
TATAGGACAGGATGTAAAATTGCTGTTGTAGATGAAACGGGAAAACTTTTGGACACTGCTACAGTATATCCTACTCCTCC
TCAAAATGATTTTGAAAATTCTAAAAAGGTTTTAAAAGAGCTAATAGAAAAATACAATGTCACTTTAATTGCTTTGGGAA
ATGGAACTGCTTCAAGAGAGAGTGAAATGTTTATAGCAGAGCTTATAAAAGAACTTTCAAGAGAGGTAAAGTATGTGATA
GTGAATGAAGCAGGGGCATCAGTCTATTCTGCTTCTCAAATAGGTACAGAGGAATTTCCTGATATAAACGTAAGTTTAAG
AGGAGCTATCTCACTGGCGCGAAGGCTTCAAGACCCATTGGCAGAGCTTGTAAAAATTGATCCAAAGTCCATCGGGGTAG
GACAGTATCAACACGATGTAGACCAGAAAAAACTGGGAGATGCTTTAAACGGTGTTGTAGAAGATTGTGTAAACAGCGTA
GGTGTTGATTTAAACACTGCATCAGTATCTCTTTTAAAATACGTTTCAGGGATAAATGCTGCTATTGCCAAGAATATTGT
TGAATATCGAAACCAAATAGGCAAGTTTACAAATAGGGAGCAGCTTAAAAATGTAAAAAGATTAGGAGATACTACTTTTA
CACAATGTGCGGGTTTTTTGAGAATTTTGGACGGTGACAATATCTTTGACTCAACAGCAGTTCACCCAGAGCGTTACGAA
ACCTTAGAAAAGCTTTTGAGAAAATTTAGATATGAGAAAGAAAAACTAGATAGAAAAAAGTTAAAAGACTTTGCTAATTC
TTTAGAAGAATACGGATTAGAGAAGATTTCAGAGGAATACGATATAGGACTTCCTACACTTTATGACATAGTTTCAGAGC
TTAAAAAACCTGGAAGAGACCCAAGAGAAGACTTACCCAAGCCCATTTTAAGGTCTGATGTAATGACTATAAATGAGCTA
AAACCAGGCATGGAACTTATGGGAACAGTTAGGAATGTCACTGATTTTGGCTGCTTTGTAGATATAGGTGTTCACACTGA
TGGGCTTGTTCACATTTCTGAGATGTCTCAAAATTACATAAAACATCCTCTTGATGTGGTTTCAGTGGGAGACATTGTAA
AAGTTAGAGTTTTAAGTGTTGATATTGAGAGAAATAGAATTTCTCTTTCAATGAAATAA

Upstream 100 bases:

>100_bases
ATTTATAAACGCTTATCTAAAGCAAAAATCACAAGGGATATCTTAAAAAGGTATCCCTTTAAATTTAATCTATGTATTTC
CTAAGAGAAAGGAGTAAGTC

Downstream 100 bases:

>100_bases
AAAAATTTTTTACTGCTACTCTCTAAAAATTTATATTTCCTTCCGAAATATATAGTGAAAGTTGAACAAAGGAGGGAGAG
TGCATATGAAAAAAATATTA

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 712

Protein sequence:

>712_residues
MNRIKDILKKEFGLKDFQVENTIKLIDEGNTIPFIARYRKEATGSLSDEVLRNFYDRLTYLRNLEEKKQDTIRLIDEQGK
LTEEIKAKIENATTLQEVEDIYRPFRPKRRTRATIAKEKGLEPLAKVISSNDVTDGDVEEYAKPYLNENVPTVEEAYQGA
MDIIAEDISDDADIRKYIRSFTWNNGIIVTQALKEDRSPYEMYYDYKEAVKTIPPHRILAINRAEREKYISVKIEIDSER
IINRLIESKVNKASIFAEYYKKAIEDSYKRLIAPSIEREIRNALTEKAEEKAIIVFKENLKSLLLQPPIKGHVVMGFDPA
YRTGCKIAVVDETGKLLDTATVYPTPPQNDFENSKKVLKELIEKYNVTLIALGNGTASRESEMFIAELIKELSREVKYVI
VNEAGASVYSASQIGTEEFPDINVSLRGAISLARRLQDPLAELVKIDPKSIGVGQYQHDVDQKKLGDALNGVVEDCVNSV
GVDLNTASVSLLKYVSGINAAIAKNIVEYRNQIGKFTNREQLKNVKRLGDTTFTQCAGFLRILDGDNIFDSTAVHPERYE
TLEKLLRKFRYEKEKLDRKKLKDFANSLEEYGLEKISEEYDIGLPTLYDIVSELKKPGRDPREDLPKPILRSDVMTINEL
KPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK

Sequences:

>Translated_712_residues
MNRIKDILKKEFGLKDFQVENTIKLIDEGNTIPFIARYRKEATGSLSDEVLRNFYDRLTYLRNLEEKKQDTIRLIDEQGK
LTEEIKAKIENATTLQEVEDIYRPFRPKRRTRATIAKEKGLEPLAKVISSNDVTDGDVEEYAKPYLNENVPTVEEAYQGA
MDIIAEDISDDADIRKYIRSFTWNNGIIVTQALKEDRSPYEMYYDYKEAVKTIPPHRILAINRAEREKYISVKIEIDSER
IINRLIESKVNKASIFAEYYKKAIEDSYKRLIAPSIEREIRNALTEKAEEKAIIVFKENLKSLLLQPPIKGHVVMGFDPA
YRTGCKIAVVDETGKLLDTATVYPTPPQNDFENSKKVLKELIEKYNVTLIALGNGTASRESEMFIAELIKELSREVKYVI
VNEAGASVYSASQIGTEEFPDINVSLRGAISLARRLQDPLAELVKIDPKSIGVGQYQHDVDQKKLGDALNGVVEDCVNSV
GVDLNTASVSLLKYVSGINAAIAKNIVEYRNQIGKFTNREQLKNVKRLGDTTFTQCAGFLRILDGDNIFDSTAVHPERYE
TLEKLLRKFRYEKEKLDRKKLKDFANSLEEYGLEKISEEYDIGLPTLYDIVSELKKPGRDPREDLPKPILRSDVMTINEL
KPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK
>Mature_712_residues
MNRIKDILKKEFGLKDFQVENTIKLIDEGNTIPFIARYRKEATGSLSDEVLRNFYDRLTYLRNLEEKKQDTIRLIDEQGK
LTEEIKAKIENATTLQEVEDIYRPFRPKRRTRATIAKEKGLEPLAKVISSNDVTDGDVEEYAKPYLNENVPTVEEAYQGA
MDIIAEDISDDADIRKYIRSFTWNNGIIVTQALKEDRSPYEMYYDYKEAVKTIPPHRILAINRAEREKYISVKIEIDSER
IINRLIESKVNKASIFAEYYKKAIEDSYKRLIAPSIEREIRNALTEKAEEKAIIVFKENLKSLLLQPPIKGHVVMGFDPA
YRTGCKIAVVDETGKLLDTATVYPTPPQNDFENSKKVLKELIEKYNVTLIALGNGTASRESEMFIAELIKELSREVKYVI
VNEAGASVYSASQIGTEEFPDINVSLRGAISLARRLQDPLAELVKIDPKSIGVGQYQHDVDQKKLGDALNGVVEDCVNSV
GVDLNTASVSLLKYVSGINAAIAKNIVEYRNQIGKFTNREQLKNVKRLGDTTFTQCAGFLRILDGDNIFDSTAVHPERYE
TLEKLLRKFRYEKEKLDRKKLKDFANSLEEYGLEKISEEYDIGLPTLYDIVSELKKPGRDPREDLPKPILRSDVMTINEL
KPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=783, Percent_Identity=34.610472541507, Blast_Score=428, Evalue=1e-119,
Organism=Homo sapiens, GI27597090, Length=781, Percent_Identity=24.1997439180538, Blast_Score=103, Evalue=4e-22,
Organism=Escherichia coli, GI87082262, Length=724, Percent_Identity=45.8563535911602, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1787140, Length=73, Percent_Identity=50.6849315068493, Blast_Score=84, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17511129, Length=746, Percent_Identity=31.6353887399464, Blast_Score=296, Evalue=3e-80,
Organism=Caenorhabditis elegans, GI17552892, Length=321, Percent_Identity=27.1028037383178, Blast_Score=88, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=457, Percent_Identity=22.9759299781182, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI62484314, Length=757, Percent_Identity=33.553500660502, Blast_Score=416, Evalue=1e-116,
Organism=Drosophila melanogaster, GI24640080, Length=613, Percent_Identity=22.8384991843393, Blast_Score=95, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81046; Mature: 81046

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50126 S1 ; PS00048 PROTAMINE_P1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIKDILKKEFGLKDFQVENTIKLIDEGNTIPFIARYRKEATGSLSDEVLRNFYDRLTY
CCHHHHHHHHHCCCCCEECCCHHEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LRNLEEKKQDTIRLIDEQGKLTEEIKAKIENATTLQEVEDIYRPFRPKRRTRATIAKEKG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCC
LEPLAKVISSNDVTDGDVEEYAKPYLNENVPTVEEAYQGAMDIIAEDISDDADIRKYIRS
HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FTWNNGIIVTQALKEDRSPYEMYYDYKEAVKTIPPHRILAINRAEREKYISVKIEIDSER
HCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCEEEEEEEECHHH
IINRLIESKVNKASIFAEYYKKAIEDSYKRLIAPSIEREIRNALTEKAEEKAIIVFKENL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEHHHH
KSLLLQPPIKGHVVMGFDPAYRTGCKIAVVDETGKLLDTATVYPTPPQNDFENSKKVLKE
HHHHHCCCCCCCEEEECCHHHHCCCEEEEECCCCCHHCCCEECCCCCCCCHHHHHHHHHH
LIEKYNVTLIALGNGTASRESEMFIAELIKELSREVKYVIVNEAGASVYSASQIGTEEFP
HHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCC
DINVSLRGAISLARRLQDPLAELVKIDPKSIGVGQYQHDVDQKKLGDALNGVVEDCVNSV
CCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GVDLNTASVSLLKYVSGINAAIAKNIVEYRNQIGKFTNREQLKNVKRLGDTTFTQCAGFL
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
RILDGDNIFDSTAVHPERYETLEKLLRKFRYEKEKLDRKKLKDFANSLEEYGLEKISEEY
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
DIGLPTLYDIVSELKKPGRDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFV
CCCCHHHHHHHHHHHCCCCCCHHHCCCHHHHHHCHHHHHCCCCHHHHHHHHHHHHCCCEE
DIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK
EECCCCCCEEEHHHHHHHHHHCCHHHHECCCEEEEEEEEEEEECCEEEEECC
>Mature Secondary Structure
MNRIKDILKKEFGLKDFQVENTIKLIDEGNTIPFIARYRKEATGSLSDEVLRNFYDRLTY
CCHHHHHHHHHCCCCCEECCCHHEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LRNLEEKKQDTIRLIDEQGKLTEEIKAKIENATTLQEVEDIYRPFRPKRRTRATIAKEKG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCC
LEPLAKVISSNDVTDGDVEEYAKPYLNENVPTVEEAYQGAMDIIAEDISDDADIRKYIRS
HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FTWNNGIIVTQALKEDRSPYEMYYDYKEAVKTIPPHRILAINRAEREKYISVKIEIDSER
HCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCEEEEEEEECHHH
IINRLIESKVNKASIFAEYYKKAIEDSYKRLIAPSIEREIRNALTEKAEEKAIIVFKENL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEHHHH
KSLLLQPPIKGHVVMGFDPAYRTGCKIAVVDETGKLLDTATVYPTPPQNDFENSKKVLKE
HHHHHCCCCCCCEEEECCHHHHCCCEEEEECCCCCHHCCCEECCCCCCCCHHHHHHHHHH
LIEKYNVTLIALGNGTASRESEMFIAELIKELSREVKYVIVNEAGASVYSASQIGTEEFP
HHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCC
DINVSLRGAISLARRLQDPLAELVKIDPKSIGVGQYQHDVDQKKLGDALNGVVEDCVNSV
CCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GVDLNTASVSLLKYVSGINAAIAKNIVEYRNQIGKFTNREQLKNVKRLGDTTFTQCAGFL
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
RILDGDNIFDSTAVHPERYETLEKLLRKFRYEKEKLDRKKLKDFANSLEEYGLEKISEEY
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
DIGLPTLYDIVSELKKPGRDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFV
CCCCHHHHHHHHHHHCCCCCCHHHCCCHHHHHHCHHHHHCCCCHHHHHHHHHHHHCCCEE
DIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK
EECCCCCCEEEHHHHHHHHHHCCHHHHECCCEEEEEEEEEEEECCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]