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The map label for this gene is yagA [C]

Identifier: 167039044

GI number: 167039044

Start: 388981

End: 390306

Strand: Direct

Name: yagA [C]

Synonym: Teth514_0381

Alternate gene names: 167039044

Gene position: 388981-390306 (Clockwise)

Preceding gene: 167039043

Following gene: 167039045

Centisome position: 15.83

GC content: 34.77

Gene sequence:

>1326_bases
ATGCTTGATGAAAAAGCGAGAGAAGCTATAGCATTAAAGAGATTTTCACTGATAAGTCCGGTGCTAAACGGACAGGTAAA
AAATCAGAAAGAATATTTTGATGCTCTTTCCGATAAACCTATTGAGATACCTTATCTTGGAATGAGAAGATATACTCCCA
AGACACTTAGAGGGTGGCTATATCAGTATTTAAGAGGCGGTATAGAAGCGTTAAAGCCGGGTTATCGAAGCGACAGAGGC
AAATACAGAAAGATAAACTTTGAACTTTCAGAGAAAATAAAGCAAAAAAAGCTTGAACATCCTGAAATGCCAAACAAACT
TCTTTATGAGACATTGATAGGAGAAGGAATAATCTCACCGGATAAAGTATCCCTTTCGACATTCTATAGGTTTTTGAAAA
ACATTCCTGTAAAATCTTTAGATAAAGAAAAAGAGGGTAAAACAAAGAGATTTTCCCATGAATTCATCAATGAACTGTGG
CAGACTGATGTCATGTATGGGCCATATATTAAAGAAGGTAAAACAAAGAGACAAACGTACCTTATTGCATATATAGATGA
TGCTTCCAGGCTGTGTACCTATGCTCGCTTTTACTATACCCAGAATTTTTTAGCTTTAAGAGACTCATTTAAAGAAGCAG
TGCTAAGAAGGGGAATACCCAAAATGCTCTACACTGACAATGGAAAGATATATAGAAGCACTCAATTTGAATATATATGT
GCATCATTAGGTACATCTCTTATTCATGCTGAGCCCTTTTCACCTCATTCAAAAGGGAAAATAGAAAGATTCTTTCATAC
GGTGAGAATGAGATTTTTAAGCACAATAGATCCTACATCCATAAAGAGTATAGATGAGCTCAATATGATGTTTTTTAAAT
GGCTGGAGGATGATTACAACCGAAAAGAACATAGCAGTATTGGCATGAGTCCTTTAGATTTTTTCATGTCTCAAATATCA
AGGGTAAATATGTGTGGTGACATAGATATGTTGAATGAATGTTTTCTCATAAGAGTAAATCGTAAAGTAAACAAAGATGC
CACACTTAAAGTGGAAAATATACTTTACGAAACAGAAGAAAAGTTTAAAGGTATGCGCTTAGAAGTCAGATATGACCCGC
AGTGGCTTAAGGATAATACACCCCTTTTACTTTTTCATGAAGGCAAAAAAGTAGGGGAAGCGTATAAGGTAAATTTTCAT
GATAATGCTAAAATTCCTGTAGAATATATCGAAGACAGAAAGGTTGTAAGCGAAAATGAAGATACTGTGGATTTTGCGGC
AAAACCTAATTCCCCAGTAATATCCTTTAATGATATCATTGATTAA

Upstream 100 bases:

>100_bases
TTGATTTTTTCTTAGCAACATAACTTTTTCCTTTAATGTCCCCCAGGTATGAGCTAAAATTACGATTAAGAAATCAAAAA
AGTGAAGGGGGAACATATAA

Downstream 100 bases:

>100_bases
AAAAAGAGGTGTTTACAATGTTTACCCAATATTTTGGAATGAAATTTAATCCATTTTCTAAAGAGATAAGTGTAAACGAC
CTTTACATAAGTGAAGACAT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MLDEKAREAIALKRFSLISPVLNGQVKNQKEYFDALSDKPIEIPYLGMRRYTPKTLRGWLYQYLRGGIEALKPGYRSDRG
KYRKINFELSEKIKQKKLEHPEMPNKLLYETLIGEGIISPDKVSLSTFYRFLKNIPVKSLDKEKEGKTKRFSHEFINELW
QTDVMYGPYIKEGKTKRQTYLIAYIDDASRLCTYARFYYTQNFLALRDSFKEAVLRRGIPKMLYTDNGKIYRSTQFEYIC
ASLGTSLIHAEPFSPHSKGKIERFFHTVRMRFLSTIDPTSIKSIDELNMMFFKWLEDDYNRKEHSSIGMSPLDFFMSQIS
RVNMCGDIDMLNECFLIRVNRKVNKDATLKVENILYETEEKFKGMRLEVRYDPQWLKDNTPLLLFHEGKKVGEAYKVNFH
DNAKIPVEYIEDRKVVSENEDTVDFAAKPNSPVISFNDIID

Sequences:

>Translated_441_residues
MLDEKAREAIALKRFSLISPVLNGQVKNQKEYFDALSDKPIEIPYLGMRRYTPKTLRGWLYQYLRGGIEALKPGYRSDRG
KYRKINFELSEKIKQKKLEHPEMPNKLLYETLIGEGIISPDKVSLSTFYRFLKNIPVKSLDKEKEGKTKRFSHEFINELW
QTDVMYGPYIKEGKTKRQTYLIAYIDDASRLCTYARFYYTQNFLALRDSFKEAVLRRGIPKMLYTDNGKIYRSTQFEYIC
ASLGTSLIHAEPFSPHSKGKIERFFHTVRMRFLSTIDPTSIKSIDELNMMFFKWLEDDYNRKEHSSIGMSPLDFFMSQIS
RVNMCGDIDMLNECFLIRVNRKVNKDATLKVENILYETEEKFKGMRLEVRYDPQWLKDNTPLLLFHEGKKVGEAYKVNFH
DNAKIPVEYIEDRKVVSENEDTVDFAAKPNSPVISFNDIID
>Mature_441_residues
MLDEKAREAIALKRFSLISPVLNGQVKNQKEYFDALSDKPIEIPYLGMRRYTPKTLRGWLYQYLRGGIEALKPGYRSDRG
KYRKINFELSEKIKQKKLEHPEMPNKLLYETLIGEGIISPDKVSLSTFYRFLKNIPVKSLDKEKEGKTKRFSHEFINELW
QTDVMYGPYIKEGKTKRQTYLIAYIDDASRLCTYARFYYTQNFLALRDSFKEAVLRRGIPKMLYTDNGKIYRSTQFEYIC
ASLGTSLIHAEPFSPHSKGKIERFFHTVRMRFLSTIDPTSIKSIDELNMMFFKWLEDDYNRKEHSSIGMSPLDFFMSQIS
RVNMCGDIDMLNECFLIRVNRKVNKDATLKVENILYETEEKFKGMRLEVRYDPQWLKDNTPLLLFHEGKKVGEAYKVNFH
DNAKIPVEYIEDRKVVSENEDTVDFAAKPNSPVISFNDIID

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 51844; Mature: 51844

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDEKAREAIALKRFSLISPVLNGQVKNQKEYFDALSDKPIEIPYLGMRRYTPKTLRGWL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHH
YQYLRGGIEALKPGYRSDRGKYRKINFELSEKIKQKKLEHPEMPNKLLYETLIGEGIISP
HHHHHCCHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
DKVSLSTFYRFLKNIPVKSLDKEKEGKTKRFSHEFINELWQTDVMYGPYIKEGKTKRQTY
CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
LIAYIDDASRLCTYARFYYTQNFLALRDSFKEAVLRRGIPKMLYTDNGKIYRSTQFEYIC
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHH
ASLGTSLIHAEPFSPHSKGKIERFFHTVRMRFLSTIDPTSIKSIDELNMMFFKWLEDDYN
HHHCCHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
RKEHSSIGMSPLDFFMSQISRVNMCGDIDMLNECFLIRVNRKVNKDATLKVENILYETEE
CHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCCCCCCCEEEHHHHHHHHHH
KFKGMRLEVRYDPQWLKDNTPLLLFHEGKKVGEAYKVNFHDNAKIPVEYIEDRKVVSENE
HHCCCEEEEEECCHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHCCCHHHCCCC
DTVDFAAKPNSPVISFNDIID
CCEEEEECCCCCEEEHHCCCC
>Mature Secondary Structure
MLDEKAREAIALKRFSLISPVLNGQVKNQKEYFDALSDKPIEIPYLGMRRYTPKTLRGWL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHH
YQYLRGGIEALKPGYRSDRGKYRKINFELSEKIKQKKLEHPEMPNKLLYETLIGEGIISP
HHHHHCCHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
DKVSLSTFYRFLKNIPVKSLDKEKEGKTKRFSHEFINELWQTDVMYGPYIKEGKTKRQTY
CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
LIAYIDDASRLCTYARFYYTQNFLALRDSFKEAVLRRGIPKMLYTDNGKIYRSTQFEYIC
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHH
ASLGTSLIHAEPFSPHSKGKIERFFHTVRMRFLSTIDPTSIKSIDELNMMFFKWLEDDYN
HHHCCHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
RKEHSSIGMSPLDFFMSQISRVNMCGDIDMLNECFLIRVNRKVNKDATLKVENILYETEE
CHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCCCCCCCEEEHHHHHHHHHH
KFKGMRLEVRYDPQWLKDNTPLLLFHEGKKVGEAYKVNFHDNAKIPVEYIEDRKVVSENE
HHCCCEEEEEECCHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHCCCHHHCCCC
DTVDFAAKPNSPVISFNDIID
CCEEEEECCCCCEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]