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The map label for this gene is nodJ

Identifier: 16519761

GI number: 16519761

Start: 438189

End: 438977

Strand: Direct

Name: nodJ

Synonym: NGR_a03450

Alternate gene names: 16519761

Gene position: 438189-438977 (Clockwise)

Preceding gene: 16519762

Following gene: 16519760

Centisome position: 81.73

GC content: 56.4

Gene sequence:

>789_bases
ATGTGGAAACGTTACGCGGCGGTCCTACCCGCCAATCCTTGGAATTGGATTGCGGTGTGGCGCCGTAATTACATGGCATG
GAAGAAAGCCGCGATCGCTTCAATTCTTGGTAACCTCGCCGAGCCCGTGACTTCGCTGTTCGGTCTCGGCTTCGGCCTGG
GTGCAATGGTGGGTCGCGTCGACGGCATTCCATATGTCGCGTTCTTGGCGGCTGGCATGGTTGCAACAAGCGCAATGATC
TCCGCGACGTTCGAGACTATTCACGCGACCTTCGCTCGCATGCAGGCAAAACGAACTTGGGAATCAGCCCTGTGCACCCA
ACTCACGCTCGGGGACATCGTCCTCGGTGAACTGGCGTGGGCAGCCAGCAAGGCGTTATTGGCCGGGACAGCAATGATGC
TCGTTGCAGCCACAATGGGCTTTGCATCGTGGCCATCCGTTCTCTTTGCCTTGCCAGTGATCGCACTCACGGGGTTCGCC
TTTGCAAGCCTGGCGATGATCGTCACAGCGCTTGCGCCCGGTTACGATTATTTCATATTTTACCAGACGCTCTTCCTCAC
ACCCATGCTGTTTTTGTCAGGAGCGGTCTTCCCAGTCAGCCAACTGCCCGACATTTTTCAGAAGCTATCGCATCTGCTGC
CGCTGGCACATTCAATCGAGCTCATTCGTCCAGCGATGCTAGATCGCCCAGGCGGAGGCGTCGCTCTGCATATCAGCGCG
CTTTGCATATTTGCAGTGATGCCATTCTTCTTATCTGTGGGACTGCTTCAGCGGCGTTTGCTGTCCTGA

Upstream 100 bases:

>100_bases
GCAATTGCGCGGGCGAACCGGTCTACGCCTATTGCAGCGTCCACCGAATCTCGAAGATGTGTTCTTGCGGTTGACCGGGC
GCGAAATGAAGGACTGAGCG

Downstream 100 bases:

>100_bases
CCTACGGCAGAAAGAGCACTGCTTGAGCTTAGCAAACGACTAAATTCAGTCGGAGCACATGGCCTACCTGTTACAAGTGA
CGAGAGATTGGAGACAACAT

Product: nodulation protein NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWKRYAAVLPANPWNWIAVWRRNYMAWKKAAIASILGNLAEPVTSLFGLGFGLGAMVGRVDGIPYVAFLAAGMVATSAMI
SATFETIHATFARMQAKRTWESALCTQLTLGDIVLGELAWAASKALLAGTAMMLVAATMGFASWPSVLFALPVIALTGFA
FASLAMIVTALAPGYDYFIFYQTLFLTPMLFLSGAVFPVSQLPDIFQKLSHLLPLAHSIELIRPAMLDRPGGGVALHISA
LCIFAVMPFFLSVGLLQRRLLS

Sequences:

>Translated_262_residues
MWKRYAAVLPANPWNWIAVWRRNYMAWKKAAIASILGNLAEPVTSLFGLGFGLGAMVGRVDGIPYVAFLAAGMVATSAMI
SATFETIHATFARMQAKRTWESALCTQLTLGDIVLGELAWAASKALLAGTAMMLVAATMGFASWPSVLFALPVIALTGFA
FASLAMIVTALAPGYDYFIFYQTLFLTPMLFLSGAVFPVSQLPDIFQKLSHLLPLAHSIELIRPAMLDRPGGGVALHISA
LCIFAVMPFFLSVGLLQRRLLS
>Mature_262_residues
MWKRYAAVLPANPWNWIAVWRRNYMAWKKAAIASILGNLAEPVTSLFGLGFGLGAMVGRVDGIPYVAFLAAGMVATSAMI
SATFETIHATFARMQAKRTWESALCTQLTLGDIVLGELAWAASKALLAGTAMMLVAATMGFASWPSVLFALPVIALTGFA
FASLAMIVTALAPGYDYFIFYQTLFLTPMLFLSGAVFPVSQLPDIFQKLSHLLPLAHSIELIRPAMLDRPGGGVALHISA
LCIFAVMPFFLSVGLLQRRLLS

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain

Homologues:

Organism=Escherichia coli, GI1786320, Length=228, Percent_Identity=24.5614035087719, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODJ_RHISN (P55475)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443881.1
- GeneID:   962495
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03450
- HOGENOM:   HBG725215
- GO:   GO:0009877
- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981
- PRINTS:   PR00164
- TIGRFAMs:   TIGR01291

Pfam domain/function: PF01061 ABC2_membrane

EC number: NA

Molecular weight: Translated: 28294; Mature: 28294

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc61fd4c)-; HASH(0xc4ebd40)-; HASH(0xc431854)-; HASH(0xc8b8a6c)-; HASH(0xb8ee48c)-; HASH(0x403cf2d0)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424