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The map label for this gene is atpD [H]

Identifier: 163845375

GI number: 163845375

Start: 1234297

End: 1235862

Strand: Reverse

Name: atpD [H]

Synonym: BSUIS_B1275

Alternate gene names: 163845375

Gene position: 1235862-1234297 (Counterclockwise)

Preceding gene: 163845376

Following gene: 163845374

Centisome position: 88.22

GC content: 61.75

Gene sequence:

>1566_bases
ATGGCAAAAGCAGCGACCCCGAAAACTACCGCCGCGGCCGAAGCAAAGCCAGCGGCGAAGGCACCCGCCAAAAAGGCGGC
GCCCAAGACCACCGCAGCAGCCAAGCCCGCTGCTACGAAGTCTGGCGCCCCCAAGGCAGCAGCAGCCGGTGCGATCGGCC
ACATTACGCAGGTCATCGGCGCTGTCGTCGACGTCAAGTTCCCGGAAGGCCAGCTGCCGCTGATCCTGAACGCGCTTGAA
GTGGACAATCAGGGCCATCGTCTGGTTCTCGAAGTTGCCCAGCACCTCGGCGAAGACACCGTGCGCACCATCGCCATGGA
CGCGACCGAAGGTCTCGTTCGCGGTCAGGAAGCACGCGACACTGGCGAACCGATCATGGTGCCGGTCGGCGTCGAAACGC
TTGGCCGCATCATGAACGTCATCGGCGAGCCGGTTGACGAAGCAGGCCCCATCAAGACCAAGGCAACCCGCGCCATCCAC
CAGAACGCGCCGGAATATATCGAACAGTCGACCGAAGCCGAAATTCTGGTCACGGGCATCAAGGTCGTCGACCTTCTGGC
GCCTTACGCCAAGGGCGGCAAGATCGGCCTCTTCGGCGGTGCAGGCGTCGGCAAGACCGTTCTCATCATGGAACTCATCA
ACAACGTCGCCAAGGCGCACGGCGGTTATTCCGTGTTCGCAGGCGTCGGTGAGCGTACCCGTGAGGGCAACGACCTTTAC
CACGAAATGATCGAGTCGGGCGTGAACAAGCTCGGCGGCGGCGAAGGCTCCAAGGCAGCCCTCGTTTACGGCCAGATGAA
CGAACCCCCGGGTGCCCGCGCCCGCGTTGCCCTTTCCGGTCTGACGGTTGCTGAAAACTTCCGTGACCAGGGCCAGGACG
TTCTGTTCTTCGTGGACAACATCTTCCGCTTCACGCAGGCAGGTTCGGAAGTGTCGGCTCTTCTCGGCCGTATTCCTTCC
GCTGTGGGTTATCAGCCGACGCTGGCAACCGACATGGGCGCCATGCAGGAACGCATCACCACGACGACCAAGGGTTCGAT
CACCTCGGTTCAGGCCATTTACGTGCCTGCCGACGACTTGACCGACCCGGCACCGGCAACCTCGTTCGCCCACCTGGACG
CAACGACCGTTCTGTCGCGCTCGATCGCTGAAAAGGGTATCTACCCGGCTGTTGACCCGCTCGACTCCACGTCGCGTATG
CTCGACCCGAAGGTCGTCGGTGAAGAACACTATGCCGTCGCCCGTCAGGTTCAGTCGATCCTGCAACGTTACAAGGCCCT
TCAGGACATCATCGCGATCCTGGGCATGGACGAACTGTCTGAAGAAGACAAGCTCACCGTTGCCCGCGCCCGCAAGATCG
AACGCTTCCTGTCGCAGCCGTTCTTCGTTGCTGAAGTCTTCACCGGTTCGCCGGGCAAGCTGGTCGATCTCGCCGACACC
ATCAAGGGCTTCAAGGGCCTTTGCGCTGGCGACTACGATCACCTTCCGGAAGCTGCCTTCTACATGGTCGGCAGCATCGA
GGAAGCACTCGAAAAGGCCAAGAAGCTGGCGGCTGAAGCTGCCTGA

Upstream 100 bases:

>100_bases
CGGCATCGCATAAATGTGGCGAAATAGAATTTGGTTTACCGCATGATTTTCCGGAAAGTCTGCAACTTTTCGGGATCGTG
CTAACGGAAGGTAAGGATCG

Downstream 100 bases:

>100_bases
TGAATTGAGTTTCCGGTGGGCCTTCGGGCCCACCGCGAAGGCCCAATCATTTTGTCTGAGCTGATTTTTTCCGCAAAAGG
GTATCCATTTTCGGGATCAT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MAKAATPKTTAAAEAKPAAKAPAKKAAPKTTAAAKPAATKSGAPKAAAAGAIGHITQVIGAVVDVKFPEGQLPLILNALE
VDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIH
QNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY
HEMIESGVNKLGGGEGSKAALVYGQMNEPPGARARVALSGLTVAENFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPS
AVGYQPTLATDMGAMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRM
LDPKVVGEEHYAVARQVQSILQRYKALQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAEVFTGSPGKLVDLADT
IKGFKGLCAGDYDHLPEAAFYMVGSIEEALEKAKKLAAEAA

Sequences:

>Translated_521_residues
MAKAATPKTTAAAEAKPAAKAPAKKAAPKTTAAAKPAATKSGAPKAAAAGAIGHITQVIGAVVDVKFPEGQLPLILNALE
VDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIH
QNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY
HEMIESGVNKLGGGEGSKAALVYGQMNEPPGARARVALSGLTVAENFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPS
AVGYQPTLATDMGAMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRM
LDPKVVGEEHYAVARQVQSILQRYKALQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAEVFTGSPGKLVDLADT
IKGFKGLCAGDYDHLPEAAFYMVGSIEEALEKAKKLAAEAA
>Mature_520_residues
AKAATPKTTAAAEAKPAAKAPAKKAAPKTTAAAKPAATKSGAPKAAAAGAIGHITQVIGAVVDVKFPEGQLPLILNALEV
DNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQ
NAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH
EMIESGVNKLGGGEGSKAALVYGQMNEPPGARARVALSGLTVAENFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSA
VGYQPTLATDMGAMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRML
DPKVVGEEHYAVARQVQSILQRYKALQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAEVFTGSPGKLVDLADTI
KGFKGLCAGDYDHLPEAAFYMVGSIEEALEKAKKLAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=522, Percent_Identity=77.3946360153257, Blast_Score=769, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=301, Percent_Identity=28.5714285714286, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI50345984, Length=318, Percent_Identity=26.1006289308176, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI4757810, Length=318, Percent_Identity=26.1006289308176, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI19913428, Length=374, Percent_Identity=25.9358288770053, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI19913426, Length=368, Percent_Identity=25.2717391304348, Blast_Score=94, Evalue=5e-19,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=71.8884120171674, Blast_Score=676, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=342, Percent_Identity=29.2397660818713, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=435, Percent_Identity=25.0574712643678, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25144756, Length=476, Percent_Identity=77.7310924369748, Blast_Score=738, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=299, Percent_Identity=28.4280936454849, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=356, Percent_Identity=24.7191011235955, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=356, Percent_Identity=24.7191011235955, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=320, Percent_Identity=24.0625, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71988063, Length=320, Percent_Identity=24.0625, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71988074, Length=272, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=499, Percent_Identity=72.3446893787575, Blast_Score=712, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=359, Percent_Identity=25.9052924791086, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6319370, Length=371, Percent_Identity=24.7978436657682, Blast_Score=91, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=81.9148936170213, Blast_Score=763, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=509, Percent_Identity=67.9764243614931, Blast_Score=668, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=74.7252747252747, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI20129479, Length=349, Percent_Identity=27.2206303724928, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583988, Length=304, Percent_Identity=28.9473684210526, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583986, Length=304, Percent_Identity=28.9473684210526, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583984, Length=304, Percent_Identity=28.9473684210526, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583992, Length=304, Percent_Identity=28.6184210526316, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI281361666, Length=360, Percent_Identity=25.5555555555556, Blast_Score=99, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24646341, Length=360, Percent_Identity=25.5555555555556, Blast_Score=99, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17136796, Length=360, Percent_Identity=25.5555555555556, Blast_Score=99, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24658560, Length=320, Percent_Identity=25.3125, Blast_Score=93, Evalue=5e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 54791; Mature: 54660

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAATPKTTAAAEAKPAAKAPAKKAAPKTTAAAKPAATKSGAPKAAAAGAIGHITQVIG
CCCCCCCCCCHHCCCCCCCCCCHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARD
HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
TGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGI
CCCCEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCEEEEHHH
KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY
HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH
HEMIESGVNKLGGGEGSKAALVYGQMNEPPGARARVALSGLTVAENFRDQGQDVLFFVDN
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCEEEHHHHH
IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTTKGSITSVQAIYVPADDL
HHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC
TDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPKVVGEEHYAVARQVQSI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHCCCHHHHHHHHHHHH
LQRYKALQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAEVFTGSPGKLVDLADT
HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEHHHHH
IKGFKGLCAGDYDHLPEAAFYMVGSIEEALEKAKKLAAEAA
HHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKAATPKTTAAAEAKPAAKAPAKKAAPKTTAAAKPAATKSGAPKAAAAGAIGHITQVIG
CCCCCCCCCHHCCCCCCCCCCHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARD
HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
TGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGI
CCCCEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCEEEEHHH
KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY
HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH
HEMIESGVNKLGGGEGSKAALVYGQMNEPPGARARVALSGLTVAENFRDQGQDVLFFVDN
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCEEEHHHHH
IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTTKGSITSVQAIYVPADDL
HHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC
TDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPKVVGEEHYAVARQVQSI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHCCCHHHHHHHHHHHH
LQRYKALQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAEVFTGSPGKLVDLADT
HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEHHHHH
IKGFKGLCAGDYDHLPEAAFYMVGSIEEALEKAKKLAAEAA
HHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA