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The map label for this gene is slyA [H]

Identifier: 163845372

GI number: 163845372

Start: 1232985

End: 1233422

Strand: Reverse

Name: slyA [H]

Synonym: BSUIS_B1272

Alternate gene names: 163845372

Gene position: 1233422-1232985 (Counterclockwise)

Preceding gene: 163845373

Following gene: 163845369

Centisome position: 88.05

GC content: 57.53

Gene sequence:

>438_bases
ATGAGCAGGGCGGATCTCAGAGCAGAAATGATCGATGCCATGGCGAAGGTAAATCGCAGGCTTCGTACAGTGTTCGATGC
ACGCGTGAAAGAACGTGGGCTGACGCTGGCGCGAGCGCGCACTTTGCTTGCCCTTATAGAACAGGAAGGCCTTTACCAGA
AGGAACTGGCCGAGGCTCTTGAGATTGAGAACGCTACCATGGTGCGTCTTCTCGACGGGCTGGAGCGTCAGTCCTTCATC
GAGCGGCAGGCCGTGCAGGGCGACCGTCGCGCCAAGCGGGTGGTGATGACGGCTGAAGGCACGCAACTGGCGGCTCAGGT
CGAGAAACTTGCGGGGGATGTGCGTGAAGATCTGCTGGATGGCGTCAGCGATGAAGAATTGAGCATTGCGCTGAATGTGA
TGCGCAAGATGTCCAGTTCGATGAGCAAGACCCATTGA

Upstream 100 bases:

>100_bases
ATCCCATCACGCTTGCGTGAGGTTGGCGAGTTTGCTTGAAAATAACCCGCCAGCAATCTATTCAGCAATTGTTAGTTTGC
TAATATATGAGGCGATTGGA

Downstream 100 bases:

>100_bases
GCCATGCGCGCGAACCGATGAAGAAACCGGGGCTTTGCTCCGGTTTTTTATTTGGCCAGTACCGAAAATGTTCTATGGCG
CGAGTGTGCGCAGATAGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSRADLRAEMIDAMAKVNRRLRTVFDARVKERGLTLARARTLLALIEQEGLYQKELAEALEIENATMVRLLDGLERQSFI
ERQAVQGDRRAKRVVMTAEGTQLAAQVEKLAGDVREDLLDGVSDEELSIALNVMRKMSSSMSKTH

Sequences:

>Translated_145_residues
MSRADLRAEMIDAMAKVNRRLRTVFDARVKERGLTLARARTLLALIEQEGLYQKELAEALEIENATMVRLLDGLERQSFI
ERQAVQGDRRAKRVVMTAEGTQLAAQVEKLAGDVREDLLDGVSDEELSIALNVMRKMSSSMSKTH
>Mature_144_residues
SRADLRAEMIDAMAKVNRRLRTVFDARVKERGLTLARARTLLALIEQEGLYQKELAEALEIENATMVRLLDGLERQSFIE
RQAVQGDRRAKRVVMTAEGTQLAAQVEKLAGDVREDLLDGVSDEELSIALNVMRKMSSSMSKTH

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=129, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16316; Mature: 16185

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRADLRAEMIDAMAKVNRRLRTVFDARVKERGLTLARARTLLALIEQEGLYQKELAEAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHH
EIENATMVRLLDGLERQSFIERQAVQGDRRAKRVVMTAEGTQLAAQVEKLAGDVREDLLD
HHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GVSDEELSIALNVMRKMSSSMSKTH
CCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRADLRAEMIDAMAKVNRRLRTVFDARVKERGLTLARARTLLALIEQEGLYQKELAEAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHH
EIENATMVRLLDGLERQSFIERQAVQGDRRAKRVVMTAEGTQLAAQVEKLAGDVREDLLD
HHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GVSDEELSIALNVMRKMSSSMSKTH
CCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA