Click here to switch to the map view.

The map label for this gene is yocS [H]

Identifier: 163845268

GI number: 163845268

Start: 1138406

End: 1139350

Strand: Reverse

Name: yocS [H]

Synonym: BSUIS_B1164

Alternate gene names: 163845268

Gene position: 1139350-1138406 (Counterclockwise)

Preceding gene: 163845269

Following gene: 163845267

Centisome position: 81.33

GC content: 59.05

Gene sequence:

>945_bases
ATGAAAGCTATTGCCGCTTTTTCTGATTTTGTAGGGCGCAGTTTTGCCATATGGGTCATTGTTTTTGCCGCGCTGGGCTT
TGTCATGCCGGCAACGTTCAGCATCTTTGCGCCCTGGATCGTGGTTCTGCTAGGCATCATCATGTTCGGCATGGGCCTGA
CGATTTCGGGCAAGGATTTTGCTGAAGTTGCCAAAAGGCCGTTTGATGTCGCCATCGGTGTGCTGGCGCAGTTCATCATC
ATGCCGCTTCTTGCCGTGCTTCTGACCCGAATCATTCCCATGTCGCCGGAGGTCGCGGCGGGTGTGATTCTCGTTGGCTG
CTGCCCCGGCGGCACGGCCTCCAATGTCATGACCTATCTGTCGAAGGGCGATGTGGCGCTCAGCGTTGCCTGCACCAGCG
TTACCACGCTACTCGCACCGCTGGTCACGCCTTTCCTCGTCTGGTTCTTCGCCAGCCAGTATCTGCCGGTCGATGCGATG
AGCATGTTCATCAGCATCGTGAAGGTGATCCTCGTGCCGCTGGCGCTCGGTTTCGTTCTCCAGAAGCTCGTGCCGGGCGT
GGTCAAGGCTGCGGTGCCCATGCTGCCGCTGGTGTCGGTGGTCGGGATCGTGCTGATCGTCGCCGCCGTTGTTGCGGTCA
ACAAGGCCGCTATCGCACAGTCGGGCCTGCTGATCTTCGCGGTTGTCGTCCTGCATAATTGCTGCGGGTTGCTTCTTGGC
TATTTCGCGGGGCTTTCGCTTGCCAAGCGCAAGGCAATCAGCATCGAGGTCGGCATGCAGAACAGCGGGCTGGGGGCTGC
GCTCGCCAATGCGCATTTCTCGCCGCTTGCCGCGGTGCCGAGCGCCGTTTTCAGCGTCTGGCACAATATTTCCGGTGCGC
TGGTCGCAAGCTATTATGCGCGCATGGAAGATGATGCTTCCGAAACGCAGACGTCCGCGCAATAA

Upstream 100 bases:

>100_bases
CTTGCGGGCAACTTCAAATATTTTCATTTTAAAAGGCCGGATTGGGTTAAAGAGCGGATTAAGCTATTAAACATTGCGCG
CGTTTTGAAAGGGGAGGGAC

Downstream 100 bases:

>100_bases
GGAAATTCTACCCGCCTGGAGCAATCCGGGCGGGTTTCGTTAAAATATTCCACGAATGGCGTATTGAGGAAAAGCGCGCT
TTCGGCTATCCCGGTAAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYLSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMEDDASETQTSAQ

Sequences:

>Translated_314_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYLSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMEDDASETQTSAQ
>Mature_314_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYLSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMEDDASETQTSAQ

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=250, Percent_Identity=32, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI37537552, Length=288, Percent_Identity=26.3888888888889, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI4506971, Length=265, Percent_Identity=29.0566037735849, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI58219066, Length=240, Percent_Identity=30, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI24308414, Length=252, Percent_Identity=28.1746031746032, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32722; Mature: 32722

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AEVAKRPFDVAIGVLAQFIIMPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCHHHHHHHH
SKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAMSMFISIVKVILVPLALGFVL
HCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYA
HHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
RMEDDASETQTSAQ
HHCCCHHHHHCCCC
>Mature Secondary Structure
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AEVAKRPFDVAIGVLAQFIIMPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCHHHHHHHH
SKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAMSMFISIVKVILVPLALGFVL
HCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYA
HHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
RMEDDASETQTSAQ
HHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]