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The map label for this gene is ydhC [H]

Identifier: 163845129

GI number: 163845129

Start: 993430

End: 994116

Strand: Reverse

Name: ydhC [H]

Synonym: BSUIS_B1010

Alternate gene names: 163845129

Gene position: 994116-993430 (Counterclockwise)

Preceding gene: 163845130

Following gene: 163845128

Centisome position: 70.97

GC content: 60.84

Gene sequence:

>687_bases
TTGTCGGCTTACGAGTGGCGCAGTCAGACCCGTCTGCTGGATGAAGTTGCCGAGGCGCTTCGGGAGCGGATTTATGCGGG
CGATTATGCACCGGGCGCAATCTTGCGGCAGGAGCATATTGCGACGGAATTTGGCATCAGCCGCACACCGCTGCGCGAGG
CATTGCGTGTTCTGGAACGTGACGGACTGGTCATCCACCTGCCGGGCAGGGGGGTTCGTGTTGCCTCCGCCGATCTCACG
CGCCTGATCGATGCTTATGCTGTGCGTGAGGTGCTGGACGGCGTTGCGGCGCGTTTTGCCGCCGAACGGGCGAGCGATGC
GGATATCGCAAAGCTGCGCGCGCATGTTGCGGGGCAGGACAAGGTTGTCGATCCGTGGGATCCGAAAGCCTATACCCAAT
CCAATGTCGATTTTCACATGGCGGTGATGAACACGGCGGGCAATGCCTCGCTGATTGCCTTCGTGCCACTTTTACGCATG
ACATCGCAGGTTTTTGCGCCGTCCTTTTCACTGTCGGTGGACCGGGCGCGCGATGCAATCCGGGAACATGCAGCCATTGT
CGAAGCCATTGCCGCCCGCGATGGCGAGGAAGCCGAACGGCTGGCGCGGGCGCATATCCGCGCAACCACGGCAAGGCTGG
AGGCGGAACGGCCTCATCGGGAGAATGACAATGACGCAAGAAAATAA

Upstream 100 bases:

>100_bases
AACTATCGGGCTGATTTTTTGAAAAGACCGTCCGTTTTCAGATTGACCGATTTTGTATCCAGGATATAGTTTGACGAAAG
AGAGTTGGGAGGCTTTCCTA

Downstream 100 bases:

>100_bases
GATGGGGAAGCATGAAAACAAGGCAGGAGGAGCCAGCTTGCTTCATTATGGCAATTTCATCGCGGGCCAGTGGCAGGATG
CCGTTGGCGGCGAGCATATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSAYEWRSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRGVRVASADLT
RLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAYTQSNVDFHMAVMNTAGNASLIAFVPLLRM
TSQVFAPSFSLSVDRARDAIREHAAIVEAIAARDGEEAERLARAHIRATTARLEAERPHRENDNDARK

Sequences:

>Translated_228_residues
MSAYEWRSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRGVRVASADLT
RLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAYTQSNVDFHMAVMNTAGNASLIAFVPLLRM
TSQVFAPSFSLSVDRARDAIREHAAIVEAIAARDGEEAERLARAHIRATTARLEAERPHRENDNDARK
>Mature_227_residues
SAYEWRSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRGVRVASADLTR
LIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAYTQSNVDFHMAVMNTAGNASLIAFVPLLRMT
SQVFAPSFSLSVDRARDAIREHAAIVEAIAARDGEEAERLARAHIRATTARLEAERPHRENDNDARK

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=222, Percent_Identity=27.4774774774775, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994961, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=24.0566037735849, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI87082149, Length=201, Percent_Identity=26.3681592039801, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI1786303, Length=224, Percent_Identity=28.5714285714286, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25275; Mature: 25144

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYEWRSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLER
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DGLVIHLPGRGVRVASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQD
CCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
KVVDPWDPKAYTQSNVDFHMAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSVDRARDAI
CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
REHAAIVEAIAARDGEEAERLARAHIRATTARLEAERPHRENDNDARK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAYEWRSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DGLVIHLPGRGVRVASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQD
CCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
KVVDPWDPKAYTQSNVDFHMAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSVDRARDAI
CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
REHAAIVEAIAARDGEEAERLARAHIRATTARLEAERPHRENDNDARK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]