Click here to switch to the map view.

The map label for this gene is rarA

Identifier: 16273484

GI number: 16273484

Start: 1658455

End: 1659795

Strand: Reverse

Name: rarA

Synonym: HI1590

Alternate gene names: 16273484

Gene position: 1659795-1658455 (Counterclockwise)

Preceding gene: 16273485

Following gene: 16273480

Centisome position: 90.69

GC content: 41.76

Gene sequence:

>1341_bases
ATGTCTAACTTCAATTTTGATTTTGCCGAAAATGATTTTGGCCCACTGGCAGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGTCATATTTATTCTATGA
TTTTTTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCCATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTAAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTTAATGGGGATGCACGATTAGCTTTGAATT
GCCTCGAATTAATGGTGGATATGGCGGATGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGCCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGAGACCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
AGTCGCGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATATATCTTTCGGTAGCACCAAAAAGTAATGC
GGTTTATACTGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTCGGATATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Upstream 100 bases:

>100_bases
AGAAAAAGGCGTTGAAGTGGATGACCAACGTAAAAAATAACAAGTGATTATTTTAAATAAGGGCGTAGAAATACGCCCTT
CAATTTTTTGAGAAATAAAA

Downstream 100 bases:

>100_bases
TCTTTATTTAGGATTTTTTTAGAATGGAATGAAAGTGCGGTTAATTTGAAAACTGTTTTGAAATTGACCGCACTTTTTTA
CTTAATTTTTTAAGCAAATC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSNFNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
SRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Sequences:

>Translated_446_residues
MSNFNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
SRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK
>Mature_445_residues
SNFNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQRINAEVERI
SAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYV
LKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVLG
ERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFS
RVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAG
ENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=42.369020501139, Blast_Score=322, Evalue=4e-88,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=38.2687927107062, Blast_Score=266, Evalue=4e-71,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=73.1543624161074, Blast_Score=684, Evalue=0.0,
Organism=Escherichia coli, GI1786676, Length=277, Percent_Identity=25.2707581227437, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=40.1392111368909, Blast_Score=293, Evalue=4e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=223, Percent_Identity=29.1479820627803, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RARA_HAEIN (P45262)

Other databases:

- EMBL:   L42023
- PIR:   F64172
- RefSeq:   NP_439735.1
- ProteinModelPortal:   P45262
- SMR:   P45262
- GeneID:   950837
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1590
- NMPDR:   fig|71421.1.peg.1510
- TIGR:   HI_1590
- HOGENOM:   HBG635390
- OMA:   PEGELAI
- ProtClustDB:   PRK13342
- BioCyc:   HINF71421:HI_1590-MONOMER
- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886
- SMART:   SM00382

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C

EC number: NA

Molecular weight: Translated: 50218; Mature: 50086

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPG
CCCCCCCCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC
TGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHCCC
SQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVED
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
DVGNADPRAMQVALAAWDCFSRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAK
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCEEEEHHHHHHHHH
DLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFPPELKDTQYYFPTNR
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCC
GMEIQIKEKLERLREQDKSAVKKRYK
CCEEEHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNFNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPG
CCCCCCCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC
TGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHCCC
SQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVED
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
DVGNADPRAMQVALAAWDCFSRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAK
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCEEEEHHHHHHHHH
DLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFPPELKDTQYYFPTNR
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCC
GMEIQIKEKLERLREQDKSAVKKRYK
CCEEEHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800