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The map label for this gene is yhjC [C]

Identifier: 16273274

GI number: 16273274

Start: 1449976

End: 1450842

Strand: Reverse

Name: yhjC [C]

Synonym: HI1364

Alternate gene names: 16273274

Gene position: 1450842-1449976 (Counterclockwise)

Preceding gene: 16273276

Following gene: 16273262

Centisome position: 79.28

GC content: 34.26

Gene sequence:

>867_bases
ATGGATAAACTCAACGCGATTTCTATTTTCTGCAAAGTCATTGAAACCCAAAGTTTTACTTTGGCAGCAAAGCAACAAAA
TATTTCTGTGGCGATGGCAAGCAAATTAGTTTCACAATTAGAAGAACATTTAAAAACACGATTGTTACAACGTACCACCA
GAAAAATTATGCCTACCGAAGCTGGAATGATGTATTATCAACGCTGTCAAGGCATTTTGCTTGATTTAGATGAAGCAGAT
TCCAGCATTACTCAGCTTACCAGTTCATTACAAGGAAATTTACTGATTTCCGTTCCTCGTGATTTTGGTTTACTTTTTAT
TGCACCAAATTTACCCACTTTTATGGCTAAGCATCCTCATTTGCATATTGAAGTTGAATTTAATGATAAGAAAATCGATT
TATTATCCGAAGGCTATGATCTTGCTCTTCGTATTGGTTATATGGAAGATAGCTCGTTGGTTTCACGTAAAATAGGAACT
ACTACTGTTCATTTTGCAGCGTCGCCTAATTATCTTGAAACGAATGGTATTCCACAAACGCCTGATGATTTAGAACATCA
CAATGGCTTACTTTATAAAAATGCAATGAATCAGGTAAATTGGGTTGGTTCACGTATAAATCAAACCCAACGTTTCAAAA
TCCAATCCAAAGTAGTAAGTAATAGCGGTTTTGCCTTATTAAATATGGCAAAAGCGGGACTAGGTATTGCTAATTTACCA
AAATTTATTTTAGGTAGAGCCTTTGAAAAAGGCGAGCTTATTGAAATATTGCCAGAATATAAACAACAAAAATTAGAAAT
TCATGTGGTCTATCCAAACAGAAGACATTTACCAATAAAAGTAACGGGCATTTCATTGAATTTTTAA

Upstream 100 bases:

>100_bases
CTCATTTGATTACCTAATATTACTAGAATTTTGTAAAATTGGCGGTATAGTGCAAAGTTATGTTGGCAAAATCAAGCATT
TTTTCAAAAAAGGTCTATAA

Downstream 100 bases:

>100_bases
TCTGGATTGGGCTTGTGTTCAGAAATTTTGGAAAATCATGAAGATAATATTTAAATGCTATAAATAAAAATACCGCACTT
AAGCAACCCAAAGTGCGGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMMYYQRCQGILLDLDEAD
SSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIEVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGT
TTVHFAASPNYLETNGIPQTPDDLEHHNGLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLP
KFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVTGISLNF

Sequences:

>Translated_288_residues
MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMMYYQRCQGILLDLDEAD
SSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIEVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGT
TTVHFAASPNYLETNGIPQTPDDLEHHNGLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLP
KFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVTGISLNF
>Mature_288_residues
MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMMYYQRCQGILLDLDEAD
SSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIEVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGT
TTVHFAASPNYLETNGIPQTPDDLEHHNGLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLP
KFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVTGISLNF

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI145693193, Length=283, Percent_Identity=35.3356890459364, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=32.2695035460993, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1786401, Length=253, Percent_Identity=31.2252964426877, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787589, Length=270, Percent_Identity=28.8888888888889, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1789440, Length=279, Percent_Identity=27.5985663082437, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=29.3706293706294, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787128, Length=276, Percent_Identity=23.5507246376812, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789173, Length=192, Percent_Identity=28.125, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788706, Length=256, Percent_Identity=22.65625, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=32.03125, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y1364_HAEIN (P43011)

Other databases:

- EMBL:   U20964
- EMBL:   L42023
- PIR:   D64171
- RefSeq:   NP_439515.1
- ProteinModelPortal:   P43011
- GeneID:   950273
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1364
- NMPDR:   fig|71421.1.peg.1300
- TIGR:   HI_1364
- HOGENOM:   HBG685425
- OMA:   AISIFCK
- ProtClustDB:   CLSK892402
- BioCyc:   HINF71421:HI_1364-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 32423; Mature: 32423

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE
CCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH
HHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHCCCE
LHIEVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQT
EEEEEEECCCEEEEECCCCEEEEEEEECCCHHHHHHCCCCEEEEEECCCCEEECCCCCCC
PDDLEHHNGLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLP
CCHHHHCCCEEEEHHHHHHHHHHHHCCCHHEEEEEHHHHCCCCEEEEEHHHHCCCHHHCH
KFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVTGISLNF
HHHHHCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE
CCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH
HHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHCCCE
LHIEVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQT
EEEEEEECCCEEEEECCCCEEEEEEEECCCHHHHHHCCCCEEEEEECCCCEEECCCCCCC
PDDLEHHNGLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLP
CCHHHHCCCEEEEHHHHHHHHHHHHCCCHHEEEEEHHHHCCCCEEEEEHHHHCCCHHHCH
KFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVTGISLNF
HHHHHCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800