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The map label for this gene is deoC [H]

Identifier: 16273041

GI number: 16273041

Start: 1182410

End: 1183081

Strand: Direct

Name: deoC [H]

Synonym: HI1116

Alternate gene names: 16273041

Gene position: 1182410-1183081 (Clockwise)

Preceding gene: 16273038

Following gene: 16273044

Centisome position: 64.61

GC content: 38.54

Gene sequence:

>672_bases
ATGACATCAAATCAACTTGCTCAATATATCGATCACACCGCACTTACCGCAGAAAAAAATGAACAAGATATTTCGACACT
CTGTAATGAAGCGATTGAACACGGATTTTATTCTGTATGTATCAATTCTGCTTATATTCCACTCGCTAAAGAAAAACTTG
CTGGCTCAAATGTAAAAATTTGCACCGTAGTTGGATTCCCTTTGGGGGCGAATTTAACCTCAGTCAAAGCATTTGAAACG
CAAGAATCTATTAAAGCGGGTGCAAATGAAATTGATATGGTGATTAATGTAGGTTGGATAAAATCGCAAAAATGGGATGA
AGTAAAACAAGATATTCAAGCGGTATTTAATGCTTGTAATGGCACGCCATTAAAAGTGATTTTAGAAACTTGTTTGCTCA
CTAAAGATGAAATAGTGAAAGCCTGCGAAATTTGTAAAGAAATCGGTGTAGCTTTTGTTAAAACATCAACAGGCTTTAAT
AAAGGTGGTGCGACCGTAGAAGATGTTGCATTGATGAAAAACACGGTCGGCAATATTGGTGTTAAAGCATCAGGTGGTGT
GCGTGATACTGAAACTGCACTTGCAATGATTAAGGCGGGTGCGACTCGCATTGGTGCAAGCGCTGGCATTGCGATTATTA
GCGGTACTCAAGACACTCAAAGCACTTACTAA

Upstream 100 bases:

>100_bases
CCTTATCTTGTTGAGATGATTGTAATTGAGCGTAAAACCATAGTCAAAAATAAAGAATTTTTGCTACAATAGGTAAAACA
TAAATAAAAGGAGGAAAATA

Downstream 100 bases:

>100_bases
TCCTTTCACGCGTGGTATTCTTTCCACGCGTTTTTACATATTCGACAATTTCTGCAGCAAACGAACCATTGCTCGATAGC
CCAAGGCCTCCGCCAAGTGC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTSNQLAQYIDHTALTAEKNEQDISTLCNEAIEHGFYSVCINSAYIPLAKEKLAGSNVKICTVVGFPLGANLTSVKAFET
QESIKAGANEIDMVINVGWIKSQKWDEVKQDIQAVFNACNGTPLKVILETCLLTKDEIVKACEICKEIGVAFVKTSTGFN
KGGATVEDVALMKNTVGNIGVKASGGVRDTETALAMIKAGATRIGASAGIAIISGTQDTQSTY

Sequences:

>Translated_223_residues
MTSNQLAQYIDHTALTAEKNEQDISTLCNEAIEHGFYSVCINSAYIPLAKEKLAGSNVKICTVVGFPLGANLTSVKAFET
QESIKAGANEIDMVINVGWIKSQKWDEVKQDIQAVFNACNGTPLKVILETCLLTKDEIVKACEICKEIGVAFVKTSTGFN
KGGATVEDVALMKNTVGNIGVKASGGVRDTETALAMIKAGATRIGASAGIAIISGTQDTQSTY
>Mature_222_residues
TSNQLAQYIDHTALTAEKNEQDISTLCNEAIEHGFYSVCINSAYIPLAKEKLAGSNVKICTVVGFPLGANLTSVKAFETQ
ESIKAGANEIDMVINVGWIKSQKWDEVKQDIQAVFNACNGTPLKVILETCLLTKDEIVKACEICKEIGVAFVKTSTGFNK
GGATVEDVALMKNTVGNIGVKASGGVRDTETALAMIKAGATRIGASAGIAIISGTQDTQSTY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=239, Percent_Identity=29.7071129707113, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1790841, Length=208, Percent_Identity=31.25, Blast_Score=73, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17533015, Length=213, Percent_Identity=30.0469483568075, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23614; Mature: 23483

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNQLAQYIDHTALTAEKNEQDISTLCNEAIEHGFYSVCINSAYIPLAKEKLAGSNVKI
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHCCCCEEE
CTVVGFPLGANLTSVKAFETQESIKAGANEIDMVINVGWIKSQKWDEVKQDIQAVFNACN
EEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
GTPLKVILETCLLTKDEIVKACEICKEIGVAFVKTSTGFNKGGATVEDVALMKNTVGNIG
CCHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC
VKASGGVRDTETALAMIKAGATRIGASAGIAIISGTQDTQSTY
EECCCCCCHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
TSNQLAQYIDHTALTAEKNEQDISTLCNEAIEHGFYSVCINSAYIPLAKEKLAGSNVKI
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHCCCCEEE
CTVVGFPLGANLTSVKAFETQESIKAGANEIDMVINVGWIKSQKWDEVKQDIQAVFNACN
EEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
GTPLKVILETCLLTKDEIVKACEICKEIGVAFVKTSTGFNKGGATVEDVALMKNTVGNIG
CCHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC
VKASGGVRDTETALAMIKAGATRIGASAGIAIISGTQDTQSTY
EECCCCCCHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA