Click here to switch to the map view.

The map label for this gene is yrbA [C]

Identifier: 16273010

GI number: 16273010

Start: 1149047

End: 1149304

Strand: Reverse

Name: yrbA [C]

Synonym: HI1082

Alternate gene names: 16273010

Gene position: 1149304-1149047 (Counterclockwise)

Preceding gene: 16273011

Following gene: 16273009

Centisome position: 62.8

GC content: 34.11

Gene sequence:

>258_bases
ATGGAACTTCAAAAAATTGAACAAATTTTAAAAGACACACTAAATATTGCAGAAGTCTATGCACAAGGTGAAAATGCACA
TTTTGGTGTGATTGTTGTGAGTGATGAAATCGCTGCACTATCTCGTGTAAAACAACAACAAACGATTTATGCCCCTTTAA
TGCCTTATTTTAGTACTGGTGAAATTCACGCTCTAACCATCAAAACTTATACCGTAGAAAAATGGAAACGCGATCGTGCA
TTAAACCAGTTTAATTAA

Upstream 100 bases:

>100_bases
GATTAGTTTATCCACCAAAACAATTATTAACCCTAGCAGATCTCTTTGGTTTATCTGATTGGATCGCAAATTTTATATAG
CTTAACTAAACGGAAATCCG

Downstream 100 bases:

>100_bases
GGATTTAAAAATGGATAAATTTCGTGTTTATGGGCAATCTCGTTTAAGTGGAAGTGTGAATATTTCAGGCGCAAAAAACG
CCGCACTTCCAATTCTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MELQKIEQILKDTLNIAEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVEKWKRDRA
LNQFN

Sequences:

>Translated_85_residues
MELQKIEQILKDTLNIAEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVEKWKRDRA
LNQFN
>Mature_85_residues
MELQKIEQILKDTLNIAEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVEKWKRDRA
LNQFN

Specific function: Unknown

COG id: COG5007

COG function: function code K; Predicted transcriptional regulator, BolA superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bolA/yrbA family

Homologues:

Organism=Escherichia coli, GI87082226, Length=84, Percent_Identity=46.4285714285714, Blast_Score=89, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y1082_HAEIN (P45026)

Other databases:

- EMBL:   L42023
- PIR:   I64165
- RefSeq:   NP_439239.1
- ProteinModelPortal:   P45026
- SMR:   P45026
- GeneID:   949428
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1082
- NMPDR:   fig|71421.1.peg.1039
- TIGR:   HI_1082
- HOGENOM:   HBG739421
- OMA:   TINAFTP
- ProtClustDB:   CLSK870001
- BioCyc:   HINF71421:HI_1082-MONOMER
- InterPro:   IPR002634
- Gene3D:   G3DSA:3.30.300.90
- PANTHER:   PTHR12735
- PIRSF:   PIRSF003113

Pfam domain/function: PF01722 BolA; SSF82657 BolA

EC number: NA

Molecular weight: Translated: 9769; Mature: 9769

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQKIEQILKDTLNIAEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTG
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHEECCCCCCCCCC
EIHALTIKTYTVEKWKRDRALNQFN
CEEEEEEEEEEHHHHHHHCCCCCCC
>Mature Secondary Structure
MELQKIEQILKDTLNIAEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTG
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHEECCCCCCCCCC
EIHALTIKTYTVEKWKRDRALNQFN
CEEEEEEEEEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023