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The map label for this gene is ygdD [C]

Identifier: 16273002

GI number: 16273002

Start: 1138111

End: 1138485

Strand: Reverse

Name: ygdD [C]

Synonym: HI1073

Alternate gene names: 16273002

Gene position: 1138485-1138111 (Counterclockwise)

Preceding gene: 16273003

Following gene: 161350021

Centisome position: 62.21

GC content: 37.87

Gene sequence:

>375_bases
ATGAAAAACAAATACCTTACTCTTGTTGCTTTAAGCGGATTCTTCTGTGTCGCACTAGGCGCATTTGCAGCTCATGGCTT
AAGCCATATATTAGAAGCCAAAGCATTATCATGGATTGATACGGGGTTAGAATATCAAATGTTCCATACCATTGCAGTAC
TTGCCGTTGCATTATCTGCTTTACGTGACAACAAATTCGCCCGATTATCTATGTCTTCTTGGTTAATTGGAATCTTATTA
TTTAGTGGAAGTTTATACGCACTTGCTTTCGAAGCAAGCAATGTAATTGTATGGATTACGCCTATTGGCGGCACTTTATT
TTTAATCGGATGGATTAGCTTAGCTTACGGAAGTTTCAAAAGTAAATCGCTATGA

Upstream 100 bases:

>100_bases
GCTTATCGGCACAATTATTGGTGTAGCATTTTTAGGTGGAATTCCCGTTGGCCCACTTATTGCTGCAGGTATATTAGCTT
TACTTTTAGGGAAAATTTAA

Downstream 100 bases:

>100_bases
AAAACAGCTCGGTAAAACACACATTAACTCCCTTACAACAATCTCTTTTTTCTCAATTAAATGACATCATGCTGGTGGAT
CAACGTCGCTTATCCGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKNKYLTLVALSGFFCVALGAFAAHGLSHILEAKALSWIDTGLEYQMFHTIAVLAVALSALRDNKFARLSMSSWLIGILL
FSGSLYALAFEASNVIVWITPIGGTLFLIGWISLAYGSFKSKSL

Sequences:

>Translated_124_residues
MKNKYLTLVALSGFFCVALGAFAAHGLSHILEAKALSWIDTGLEYQMFHTIAVLAVALSALRDNKFARLSMSSWLIGILL
FSGSLYALAFEASNVIVWITPIGGTLFLIGWISLAYGSFKSKSL
>Mature_124_residues
MKNKYLTLVALSGFFCVALGAFAAHGLSHILEAKALSWIDTGLEYQMFHTIAVLAVALSALRDNKFARLSMSSWLIGILL
FSGSLYALAFEASNVIVWITPIGGTLFLIGWISLAYGSFKSKSL

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family

Homologues:

Organism=Escherichia coli, GI1789172, Length=124, Percent_Identity=43.5483870967742, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1073_HAEIN (P45019)

Other databases:

- EMBL:   L42023
- PIR:   H64165
- RefSeq:   NP_439229.1
- GeneID:   950051
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1073
- NMPDR:   fig|71421.1.peg.1030
- TIGR:   HI_1073
- HOGENOM:   HBG700524
- OMA:   GPITPMG
- ProtClustDB:   CLSK870235
- BioCyc:   HINF71421:HI_1073-MONOMER
- InterPro:   IPR006696

Pfam domain/function: PF04241 DUF423

EC number: NA

Molecular weight: Translated: 13450; Mature: 13450

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd390d84)-; HASH(0xd393b80)-; HASH(0xd92aaa8)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKYLTLVALSGFFCVALGAFAAHGLSHILEAKALSWIDTGLEYQMFHTIAVLAVALSA
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LRDNKFARLSMSSWLIGILLFSGSLYALAFEASNVIVWITPIGGTLFLIGWISLAYGSFK
HHCCCCEEHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCC
SKSL
CCCH
>Mature Secondary Structure
MKNKYLTLVALSGFFCVALGAFAAHGLSHILEAKALSWIDTGLEYQMFHTIAVLAVALSA
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LRDNKFARLSMSSWLIGILLFSGSLYALAFEASNVIVWITPIGGTLFLIGWISLAYGSFK
HHCCCCEEHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCC
SKSL
CCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800