Click here to switch to the map view.

The map label for this gene is yiaJ [C]

Identifier: 16272966

GI number: 16272966

Start: 1097216

End: 1098022

Strand: Direct

Name: yiaJ [C]

Synonym: HI1032

Alternate gene names: 16272966

Gene position: 1097216-1098022 (Clockwise)

Preceding gene: 16272956

Following gene: 16272967

Centisome position: 59.95

GC content: 32.47

Gene sequence:

>807_bases
ATGAATATTGAGGTGAAAATGGAAAAAGAAAAAAGCTTAGGTAATCAAGCTCTAATCAGAGGATTACGATTATTAGATAT
TCTTAGCAATTATCCTAACGGTTGCCCACTTGCTAAATTAGCAGAACTTGCTAATTTAAATAAAAGTACCGCACATCGGT
TGTTACAAGGATTACAAAATGAAGGTTATGTCAAACCAGCAAATGCTGCTGGTAGTTATCGATTAACCATAAAATGTTTA
AGTATTGGTCAAAAAGTGTTGTCGTCTATGAATATTATTCACGTGGCTTCACCTTATTTAGAACAACTTAATCTGAAATT
AGGCGAAACTATCAATTTCTCAAAAAGGGAAGATGATCATGCTATTATGATCTATAAATTAGAGCCGACTAATGGAATGT
TAAAAACACGAGCTTATATTGGCCAATACTTGAAATTATATTGCTCTGCAATGGGAAAAATTTTCTTAGCATATGAAAAA
AAAGTAGATTACCTTTCTCATTATTGGCAATCGCATCAAAGGGAAATTAAGAAATTAACTCGTTATACGATTACAGAATT
AGATGATATAAAACTTGAACTTGAAACAATCCGTCAAACAGCTTATGCGATGGATAGAGAAGAAAATGAACTAGGCGTAA
CCTGTATTGCTTGCCCAATTTTTGATTCATTTGGTCAAGTGGAATACGCTATCTCAGTTTCAATGTCTATTTATAGACTC
AATAAATTTGGTACAGATGCTTTTTTACAAGAAATCAGGAAGACGGCTGAACAGATTTCTTTAGAATTGGGATATGAAAA
TATCTAG

Upstream 100 bases:

>100_bases
GTAAAATAAATAAATTATTTATAAATCAATATGTTAAAATAATTTTACTGATTTTGTGATCTAGATCCTATTTTCTTGTG
ATAATATTTCATATTGTGAA

Downstream 100 bases:

>100_bases
CATAAATATCATATAATAACAGATAAAATATTCTAAAATTAATTGCACTTTCTATGTTATTAAAAGTAATCATACATAAT
AAAATCTTCTTAATTATTTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MNIEVKMEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCL
SIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEK
KVDYLSHYWQSHQREIKKLTRYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRL
NKFGTDAFLQEIRKTAEQISLELGYENI

Sequences:

>Translated_268_residues
MNIEVKMEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCL
SIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEK
KVDYLSHYWQSHQREIKKLTRYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRL
NKFGTDAFLQEIRKTAEQISLELGYENI
>Mature_268_residues
MNIEVKMEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCL
SIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEK
KVDYLSHYWQSHQREIKKLTRYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRL
NKFGTDAFLQEIRKTAEQISLELGYENI

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain

Homologues:

Organism=Escherichia coli, GI1789999, Length=262, Percent_Identity=63.7404580152672, Blast_Score=353, Evalue=8e-99,
Organism=Escherichia coli, GI87082359, Length=253, Percent_Identity=31.2252964426877, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1788131, Length=233, Percent_Identity=29.6137339055794, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786715, Length=254, Percent_Identity=29.9212598425197, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786468, Length=254, Percent_Identity=29.1338582677165, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790752, Length=264, Percent_Identity=31.8181818181818, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788581, Length=255, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693096, Length=143, Percent_Identity=31.4685314685315, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1032_HAEIN (P44996)

Other databases:

- EMBL:   L42023
- PIR:   D64165
- RefSeq:   NP_439192.1
- ProteinModelPortal:   P44996
- SMR:   P44996
- GeneID:   950700
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1032
- NMPDR:   fig|71421.1.peg.994
- TIGR:   HI_1032
- HOGENOM:   HBG739407
- OMA:   HAIMIYK
- ProtClustDB:   CLSK870422
- BioCyc:   HINF71421:HI_1032-MONOMER
- GO:   GO:0006350
- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00346

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR

EC number: NA

Molecular weight: Translated: 30581; Mature: 30581

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS51077 HTH_ICLR; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEVKMEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQN
CCEEEEECHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
EGYVKPANAAGSYRLTIKCLSIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDH
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCC
AIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLSHYWQSHQREIKKLT
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCEEEEEEEHHEEEEH
NKFGTDAFLQEIRKTAEQISLELGYENI
HHCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIEVKMEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQN
CCEEEEECHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
EGYVKPANAAGSYRLTIKCLSIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDH
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCC
AIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLSHYWQSHQREIKKLT
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCEEEEEEEHHEEEEH
NKFGTDAFLQEIRKTAEQISLELGYENI
HHCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800