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The map label for this gene is 16272831

Identifier: 16272831

GI number: 16272831

Start: 946725

End: 947288

Strand: Direct

Name: 16272831

Synonym: HI0893

Alternate gene names: NA

Gene position: 946725-947288 (Clockwise)

Preceding gene: 16272830

Following gene: 16272832

Centisome position: 51.73

GC content: 33.51

Gene sequence:

>564_bases
ATGCGACAAGCTAAAACAGACTTAGCTGAACAGATTTTTTCAGCGACAGATCGTTTAATGGCAAGAGAAGGGTTGAATCA
ACTTTCTATGCTCAAACTTGCGAAAGAAGCAAATGTAGCCGCAGGAACGATTTACCTTTATTTTAAAAACAAAGATGAAT
TGCTTGAACAATTTGCACACAGAGTGTTTTCAATGTTTATGGCAACACTTGAAAAAGATTTTGATGAAACTAAGCCTTTT
TTCGAACAGTATCGACAAATGTGGAAAAACATTTGGTATTTCTTACAAGAAAATCCCACTATTCTATCCAATTTAAAGCA
ATATGAATCTTTGCCGAATTTCAAGGATATTTGTAAAAACATTAAAAATTGCCGTTGGGATTTATTTTGTCATCAAGCAC
AAAAAGCTGGCTTATTAGCGGAATTATCTGAAGATATTCTCTTTTTATTAAGTTTGAAAACGGCGATAAATTTAGCCTCT
GATGCAAAATTTATCGATTTCGATCTTAAGCCTGAAATTTTAGAATCTGTGATTGAACGCTCTTGGCGTGCGATTCAGAA
ATAA

Upstream 100 bases:

>100_bases
CGTTTTTTGTTTTTTAACTTGCCAAAAAACAAAAAATAAATAAAATGAACGCTCATTCATTTTTGAGCAATTATTGCTCC
TTATTTTACTCAAGGATCTT

Downstream 100 bases:

>100_bases
TTGTTGTTATTTTTATAACGGAGCTTTAAACATGAGTCAAACTCAACATCAAAGACCAAAACGCTCACATATTTTCTTGA
TGAAAATAATTTTAGTGGTA

Product: transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPF
FEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKNIKNCRWDLFCHQAQKAGLLAELSEDILFLLSLKTAINLAS
DAKFIDFDLKPEILESVIERSWRAIQK

Sequences:

>Translated_187_residues
MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPF
FEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKNIKNCRWDLFCHQAQKAGLLAELSEDILFLLSLKTAINLAS
DAKFIDFDLKPEILESVIERSWRAIQK
>Mature_187_residues
MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPF
FEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKNIKNCRWDLFCHQAQKAGLLAELSEDILFLLSLKTAINLAS
DAKFIDFDLKPEILESVIERSWRAIQK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y893_HAEIN (P44923)

Other databases:

- EMBL:   L42023
- PIR:   F64100
- RefSeq:   NP_439054.1
- ProteinModelPortal:   P44923
- GeneID:   949896
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0893
- NMPDR:   fig|71421.1.peg.860
- TIGR:   HI_0893
- HOGENOM:   HBG644465
- OMA:   PFFEQYR
- ProtClustDB:   CLSK870373
- BioCyc:   HINF71421:HI_0893-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 22023; Mature: 22023

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH
CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHH
RVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
IKNCRWDLFCHQAQKAGLLAELSEDILFLLSLKTAINLASDAKFIDFDLKPEILESVIER
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
SWRAIQK
HHHHHCC
>Mature Secondary Structure
MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH
CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHH
RVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
IKNCRWDLFCHQAQKAGLLAELSEDILFLLSLKTAINLASDAKFIDFDLKPEILESVIER
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
SWRAIQK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800