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The map label for this gene is yibD [C]

Identifier: 16272808

GI number: 16272808

Start: 920571

End: 921323

Strand: Direct

Name: yibD [C]

Synonym: HI0868

Alternate gene names: 16272808

Gene position: 920571-921323 (Clockwise)

Preceding gene: 16272807

Following gene: 30995407

Centisome position: 50.3

GC content: 27.49

Gene sequence:

>753_bases
ATGAATATGCCACTCATTAGTATAATAATGCCTGTTTATAATGCAGAATGTTACCTTAATCAAGGTATTTTATCTTGCTT
AAATCAATCTTATCAAAACATTGAATTAATTTTAATTGATGATGGTTCAACAGATAAAAGTATTGAAATAATAAATAACA
TCATTGATAAAGATAAGCGGGTTAAACTTTTCTTTACCCCAACTAATCAAGGGCCTGCAGCGGCAAGAAATATAGGGTTA
GAAAAAGCACAAGGTGACTATATTACATTCTTAGATAGTGATGATTTTATTGCAAATGATAAATTAGAAAAACAACTTAA
TTTTATGTTGCAAAATCATCTTGTAATGACGCATGGCAACTATGCTTTCTGTGATTTGGAAGGAAATCAGATAAAATTAG
TTACGACTAGTAAAAAAATTGATTATTTAACCTTATTACAAGGTAACCAATTTAAAATAATGACTGTACTTGTTGAAAGA
GAATCTATTAAATTACTTAGGTTTCCTAATATTAAACACGAAGATTACGCCTTCTTTTTGGATTGTTTAAAAGAAGTTAA
ACAATCTATACTATATAGCCATCAGGCAAGTTCATTTGTAAGAATCGGTAAAGTCAGCGTTTCATCAAATAAATTTAAAA
GTGCAATCTGGACATTTAATATCTATTTTAAAAGAGAGAAACTAGGTGTAGTAAAATCAATTTATTATTTTATCCTCTAT
GCCTATAATGGATTTATTAAATACAAGAAATAA

Upstream 100 bases:

>100_bases
TTAATTTTTACGGATGTGGTTTATATTCCTTATGCTAGTGTATTGGGGGCATTGGGGATTTTACCTGTATTATATAAAAT
AACAAAAAGAGTAGAAGAAA

Downstream 100 bases:

>100_bases
AAATATGATTTCATTACTTATTATTAGCTTCGGGCGTTATCAAGAAGTATTGGAAACGTTTGCATGTGTCAATAAATATC
ATGGCAATAAAATTGAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNMPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVKLFFTPTNQGPAAARNIGL
EKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTVLVER
ESIKLLRFPNIKHEDYAFFLDCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILY
AYNGFIKYKK

Sequences:

>Translated_250_residues
MNMPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVKLFFTPTNQGPAAARNIGL
EKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTVLVER
ESIKLLRFPNIKHEDYAFFLDCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILY
AYNGFIKYKK
>Mature_250_residues
MNMPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVKLFFTPTNQGPAAARNIGL
EKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGNYAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTVLVER
ESIKLLRFPNIKHEDYAFFLDCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILY
AYNGFIKYKK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family

Homologues:

Organism=Escherichia coli, GI1790044, Length=155, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787259, Length=112, Percent_Identity=33.9285714285714, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788372, Length=120, Percent_Identity=35.8333333333333, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y868_HAEIN (Q57022)

Other databases:

- EMBL:   L42023
- PIR:   A64099
- RefSeq:   NP_439028.1
- ProteinModelPortal:   Q57022
- SMR:   Q57022
- GeneID:   949464
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0868
- TIGR:   HI_0868
- HOGENOM:   HBG338361
- OMA:   CLTVMID
- ProtClustDB:   CLSK808457
- BioCyc:   HINF71421:HI_0868-MONOMER
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: 2.-.-.- [C]

Molecular weight: Translated: 28916; Mature: 28916

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKR
CCCCHHHHHHHHHCCEEEECHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCE
VKLFFTPTNQGPAAARNIGLEKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGN
EEEEEEECCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECC
YAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTVLVERESIKLLRFPNIKHEDYAFFL
EEEEEECCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCHHHHHH
DCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILY
HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHH
AYNGFIKYKK
EECCEEEECC
>Mature Secondary Structure
MNMPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKR
CCCCHHHHHHHHHCCEEEECHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCE
VKLFFTPTNQGPAAARNIGLEKAQGDYITFLDSDDFIANDKLEKQLNFMLQNHLVMTHGN
EEEEEEECCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECC
YAFCDLEGNQIKLVTTSKKIDYLTLLQGNQFKIMTVLVERESIKLLRFPNIKHEDYAFFL
EEEEEECCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCHHHHHH
DCLKEVKQSILYSHQASSFVRIGKVSVSSNKFKSAIWTFNIYFKREKLGVVKSIYYFILY
HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHH
AYNGFIKYKK
EECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800