| Definition | Haemophilus influenzae Rd KW20 chromosome, complete genome. |
|---|---|
| Accession | NC_000907 |
| Length | 1,830,138 |
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The map label for this gene is alaS [H]
Identifier: 16272755
GI number: 16272755
Start: 863520
End: 866144
Strand: Reverse
Name: alaS [H]
Synonym: HI0814
Alternate gene names: 16272755
Gene position: 866144-863520 (Counterclockwise)
Preceding gene: 16272756
Following gene: 16272754
Centisome position: 47.33
GC content: 40.61
Gene sequence:
>2625_bases ATGAAAACAACAGCAGAAATAAGACAATCATTCCTTGATTTTTTCCATAGCAAAGGTCACCAAGTAGTTGAGAGTAGCTC ACTTGTGCCGGAAAATGATCCGACTTTGCTTTTCACGAACGCTGGGATGAACCAATTTAAGGATGTGTTCCTTGGAATGG ATAAACGCCCTTATTCTCGAGCCACCACCGCGCAACGTTGCGTACGTCCTGGTGGTAAGCATAACGACTTAGAAAATGTT GGTTATACCGCACGTCACCATACTTTCTTTGAAATGCTCGGTAACTTCAGTTTTGGTGATTACTTTAAACAGGATGCCAT TAATTTTGCTTGGGAATATTTAACTTCTCCACAATGGCTTGGTTTACCTAAAGAAAAACTCTGGGTAACCGTGTATGAAA CTGACGACGAAGCCTATAATATTTGGAATAAAGATGTTGGTGTTCCTGCTGAACGCATTATTCGCATTGGTGACAATAAA GGCTCACCTTACGCATCAGACAACTTCTGGGCAATGGGCGACACAGGTCCTTGCGGTCCTTGTACTGAAATTTTCTACGA TCACGGCGATCATATTTGGGGCGGGCCTCCAGGCTCACCAGAAGAAGATGGCGACCGTTATATTGAAATCTGGAACGTTG TGTTTATGCAGTTCAACCGTTTAGCAGATGGCACAATGGAAAAATTACCTCGTCCGTCTGTTGATACAGGTATGGGTTTA GAGCGTATTTCTGCTGTGTTGCAACATGTGAACTCAAACTACGAGATTGATATTTTCAAAACATTAATCGCAAAAACGGC GGAAATTGTAGGCGCAACAGATTTAACTAACAAATCACTACGTGTTATTGCTGACCATATTCGTTCTTGTGCATATTTAA TCGCCGATGGCGTTATCCCATCAAATGAAGGGCGTGGTTATGTCTTACGTCGTATTATTCGCCGCGCAGTTCGTCACGGT CACCTATTAGGTGCTAAAGAATCTTTTTTCTATAAACTCGTGCCAACTCTAATTGATGTAATGGCTGAAGCTGGAAAAGA TGTAAAAGCAAAACAAACAAATGTTGAAAAACTATTACGTCTAGAAGAAGAACAATTTGCTCGCACTCTAGAACGTGGGT TGAGCTTATTAGATGAAGCCCTTTCTCAAGTGAAAGATGGCATTCTTTCAGGTGAAGTTGCATTCAAACTTTATGATACT TATGGTTTCCCATTGGATTTAACGGCTGATGTATGTCGTGAGCGCAATATTACTATTGATGAACAAGCGTTTGACCGTAA AATGGAAGCGCAACGTACTCGTGCTCAAGCAGCGAGCCAGTTTGGTGTGGACTACAACAGCGTTATTCGTGTAGATGGCG AAACTAAGTTTGAAGGCTATACTGAAGTAGAATCTCAGGCAAAAATTACCGCACTTTTCTATGATGGTAAATCAGTGGAA AGTATCGAAGCAGGTCAAAGTGCGGTCGTTATTTTAGAAAATACGCCATTTTATGCAGAATCAGGTGGTCAGATTGGCGA TAGCGGATATTTAAGCACACAAAGTGTAACCTTTAATGTGAAAGATACCCAAAAATATGGGCAAGTATTTGGACACATTG GAGAATTAACGCAAGGAAGTTTGAAAGTTGGACAATCAGTGAATGCGATTGTGGATGCTAAACGTCGCCACAACACATCA CTCAATCACTCAGCGACACACTTATTGCACGCTGCCTTACGTCAAATTCTAGGTTTACACGTTGTGCAAAAAGGTTCGCT TGTTTCAGATAAAGCCTTACGTTTTGACTTTGCGCAACCAGAAGCCATTACCAAAGAGCAATTGAGTGAAATTGAAACAT TAGTAAACCAAAAAATCCGCGCTAACTTTCCAGTTCAAACAGATATTATGGATATTGATTCCGCAAAAGCGAAAGGAGCA ATGGCTCTCTTTGGCGAAAAATATGGCGATAAGGTTCGTGTATTAACCATGGGCGATTTCTCAATTGAGCTGTGTGGCGG TATTCACGCAAAACGCACAGGCGATATTGGTTTATTTAAAATTATTACTGAAAACGCAGTGGCTGCAGGCATTCGTCGTA TTGAAGCTGTAACAGGTCAAAATGCCATTGACTGGTTACATAATCAACAACGCATTCTGACCCAAAGCGCAGACTTATTA AAATCAGACGTAAATACCTTAGCGGAAAAAATCCAGCAACTTCAAGACAAAGCGAAGAAAGTGGAAAAAGAATTGCAAGG TCTAAAAGAAAAAGCCGCAATGCAGGCAGGTTCTTATTTTGTAAAAAGTGCGGTAAAAATCAATGGTGTTTCTGTTATCG CACAACAATTAGATGGTATAGAAACAAAATCATTACGCGTAATGGTCGATGATTTAAAAAATCAACTCGGATCAGGCGTA ATTGCATTTGCATCAATATTAGATGAAAAAGTTAATCTCGTCGTTGGAGTGACAAATGATCTAACCGCCAAAATAAAAGC TGGAGAACTTGTTAATTTAATGGCTCAACAAGTTGGAGGAAAAGGCGGTGGTCGTCCAGATATGGCAATGGCAGGAGGTT CCCAACTAGAAAATGTGACACAAGCAATTAAAGTAGCACAAGACTGGTTAAACAAAAATCTGTAG
Upstream 100 bases:
>100_bases TTGGAGTTTTGGCAAAAAGCCTTTTTATAAATTTCAAAAATATGCAAAAATAGGGCGACTTAGTTTTTATTTTTATTATG GGTAACAAGGATTCTTTTTA
Downstream 100 bases:
>100_bases TACAAGCTGGTTGGTGGAATGCCAACCGTTCCTTGATTGATAGGATATCTAATAAATGCAAACTAAGGAGATAAAAGATG TTAATCTTAACTCGTAAAGT
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSRATTAQRCVRPGGKHNDLENV GYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWLGLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNK GSPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHG HLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEALSQVKDGILSGEVAFKLYDT YGFPLDLTADVCRERNITIDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRVDGETKFEGYTEVESQAKITALFYDGKSVE SIEAGQSAVVILENTPFYAESGGQIGDSGYLSTQSVTFNVKDTQKYGQVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTS LNHSATHLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGA MALFGEKYGDKVRVLTMGDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLL KSDVNTLAEKIQQLQDKAKKVEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV IAFASILDEKVNLVVGVTNDLTAKIKAGELVNLMAQQVGGKGGGRPDMAMAGGSQLENVTQAIKVAQDWLNKNL
Sequences:
>Translated_874_residues MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSRATTAQRCVRPGGKHNDLENV GYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWLGLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNK GSPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHG HLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEALSQVKDGILSGEVAFKLYDT YGFPLDLTADVCRERNITIDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRVDGETKFEGYTEVESQAKITALFYDGKSVE SIEAGQSAVVILENTPFYAESGGQIGDSGYLSTQSVTFNVKDTQKYGQVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTS LNHSATHLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGA MALFGEKYGDKVRVLTMGDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLL KSDVNTLAEKIQQLQDKAKKVEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV IAFASILDEKVNLVVGVTNDLTAKIKAGELVNLMAQQVGGKGGGRPDMAMAGGSQLENVTQAIKVAQDWLNKNL >Mature_874_residues MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSRATTAQRCVRPGGKHNDLENV GYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWLGLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNK GSPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHG HLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEALSQVKDGILSGEVAFKLYDT YGFPLDLTADVCRERNITIDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRVDGETKFEGYTEVESQAKITALFYDGKSVE SIEAGQSAVVILENTPFYAESGGQIGDSGYLSTQSVTFNVKDTQKYGQVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTS LNHSATHLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGA MALFGEKYGDKVRVLTMGDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLL KSDVNTLAEKIQQLQDKAKKVEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV IAFASILDEKVNLVVGVTNDLTAKIKAGELVNLMAQQVGGKGGGRPDMAMAGGSQLENVTQAIKVAQDWLNKNL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=984, Percent_Identity=36.280487804878, Blast_Score=524, Evalue=1e-148, Organism=Homo sapiens, GI38569417, Length=796, Percent_Identity=36.6834170854271, Blast_Score=439, Evalue=1e-123, Organism=Homo sapiens, GI217416402, Length=390, Percent_Identity=22.5641025641026, Blast_Score=82, Evalue=3e-15, Organism=Homo sapiens, GI13376886, Length=392, Percent_Identity=22.9591836734694, Blast_Score=80, Evalue=7e-15, Organism=Escherichia coli, GI1789048, Length=873, Percent_Identity=69.0721649484536, Blast_Score=1305, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=985, Percent_Identity=35.3299492385787, Blast_Score=521, Evalue=1e-148, Organism=Caenorhabditis elegans, GI17536681, Length=749, Percent_Identity=35.1134846461949, Blast_Score=412, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6324911, Length=790, Percent_Identity=40.7594936708861, Blast_Score=540, Evalue=1e-154, Organism=Drosophila melanogaster, GI24582809, Length=975, Percent_Identity=36.7179487179487, Blast_Score=554, Evalue=1e-158, Organism=Drosophila melanogaster, GI45552267, Length=975, Percent_Identity=36.7179487179487, Blast_Score=554, Evalue=1e-158, Organism=Drosophila melanogaster, GI24658214, Length=891, Percent_Identity=29.96632996633, Blast_Score=347, Evalue=2e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 96602; Mature: 96602
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR CCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCHH ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL HHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP CCCCCCEEEEEEECCCCHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCH CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCH ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIP HHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC SNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKLLR CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH LEEEQFARTLERGLSLLDEALSQVKDGILSGEVAFKLYDTYGFPLDLTADVCRERNITID HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCC EQAFDRKMEAQRTRAQAASQFGVDYNSVIRVDGETKFEGYTEVESQAKITALFYDGKSVE HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHCCCCEEEEEEECCCCCC SIEAGQSAVVILENTPFYAESGGQIGDSGYLSTQSVTFNVKDTQKYGQVFGHIGELTQGS HHHCCCCEEEEEECCCCEECCCCCCCCCCCEEECEEEEEEHHHHHHHHHHHHHHHHCCCH LKVGQSVNAIVDAKRRHNTSLNHSATHLLHAALRQILGLHVVQKGSLVSDKALRFDFAQP HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCC EAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGAMALFGEKYGDKVRVLTMGDF CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHCCCCEEEEEEECCC SIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLL EEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KSDVNTLAEKIQQLQDKAKKVEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC ETKSLRVMVDDLKNQLGSGVIAFASILDEKVNLVVGVTNDLTAKIKAGELVNLMAQQVGG CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEEEEECCCCEEEECHHHHHHHHHHHHCC KGGGRPDMAMAGGSQLENVTQAIKVAQDWLNKNL CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR CCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCHH ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL HHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP CCCCCCEEEEEEECCCCHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCH CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCH ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIP HHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC SNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKLLR CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH LEEEQFARTLERGLSLLDEALSQVKDGILSGEVAFKLYDTYGFPLDLTADVCRERNITID HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCC EQAFDRKMEAQRTRAQAASQFGVDYNSVIRVDGETKFEGYTEVESQAKITALFYDGKSVE HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHCCCCEEEEEEECCCCCC SIEAGQSAVVILENTPFYAESGGQIGDSGYLSTQSVTFNVKDTQKYGQVFGHIGELTQGS HHHCCCCEEEEEECCCCEECCCCCCCCCCCEEECEEEEEEHHHHHHHHHHHHHHHHCCCH LKVGQSVNAIVDAKRRHNTSLNHSATHLLHAALRQILGLHVVQKGSLVSDKALRFDFAQP HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCC EAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGAMALFGEKYGDKVRVLTMGDF CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHCCCCEEEEEEECCC SIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLL EEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KSDVNTLAEKIQQLQDKAKKVEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC ETKSLRVMVDDLKNQLGSGVIAFASILDEKVNLVVGVTNDLTAKIKAGELVNLMAQQVGG CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEEEEECCCCEEEECHHHHHHHHHHHHCC KGGGRPDMAMAGGSQLENVTQAIKVAQDWLNKNL CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA