Click here to switch to the map view.

The map label for this gene is vacJ [C]

Identifier: 16272658

GI number: 16272658

Start: 766152

End: 766904

Strand: Direct

Name: vacJ [C]

Synonym: HI0718

Alternate gene names: 16272658

Gene position: 766152-766904 (Clockwise)

Preceding gene: 16272657

Following gene: 16272659

Centisome position: 41.86

GC content: 39.58

Gene sequence:

>753_bases
ATGAAAACAAAGACAATTTTGACCGCACTTTTGAGTGCCATTGCACTAACAGGTTGTGCAAATAACAACGACACGAAACA
AGTGAGTGAGCGTAATGATTCCCTTGAAGACTTCAATCGAACAATGTGGAAATTTAACTATAATGTTATAGATCGCTATG
TGCTAGAACCCGCTGCAAAAGGTTGGAATAACTATGTGCCTAAGCCGATTTCTTCTGGTCTTGCTGGCATCGCAAATAAT
CTTGATGAGCCAGTCAGTTTCATAAACCGATTAATTGAAGGTGAACCGAAAAAAGCATTTGTTCACTTTAATCGCTTTTG
GATTAACACTGTATTTGGACTAGGTGGTTTTATTGATTTTGCGAGCGCAAGCAAAGAATTACGCATAGATAATCAACGTG
GATTTGGGGAAACTTTAGGCAGTTACGGCGTAGATGCTGGCACTTATATTGTGCTACCGATTTATAATGCAACAACACCA
CGCCAATTAACGGGTGCAGTGGTTGATGCGGCTTATATGTATCCATTCTGGCAATGGGTTGGTGGTCCGTGGGCATTAGT
GAAATATGGTGTGCAAGCAGTGGATGCCCGTGCGAAAAATCTCAATAATGCAGAATTGTTACGTCAAGCTCAAGATCCAT
ATATCACGTTCCGAGAAGCTTATTACCAAAATTTACAATTTAAAGTAAACGATGGGAAATTAGTCGAAAGCAAAGAATCA
CTTCCCGATGACATACTAAAAGAAATTGATTAA

Upstream 100 bases:

>100_bases
ATGTTTGTTGAAACAGCATAAAAGAGTGTTTTTATACACAAAATTTGTTGTTATTTCACAAATTAGGTAGAATAATCCCA
TATTTATGTAAGGATTAAAA

Downstream 100 bases:

>100_bases
TAAACAGAAAAGTGCGGTAAAAATTACCCAATTTTTTATCAACTAAGGAGAAAATGATGACTCAAATTATTCATACTGAA
AAAGCACCAGCAGCCATTGG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKTKTILTALLSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAKGWNNYVPKPISSGLAGIANN
LDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDFASASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTP
RQLTGAVVDAAYMYPFWQWVGGPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESKES
LPDDILKEID

Sequences:

>Translated_250_residues
MKTKTILTALLSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAKGWNNYVPKPISSGLAGIANN
LDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDFASASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTP
RQLTGAVVDAAYMYPFWQWVGGPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESKES
LPDDILKEID
>Mature_250_residues
MKTKTILTALLSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAKGWNNYVPKPISSGLAGIANN
LDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDFASASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTP
RQLTGAVVDAAYMYPFWQWVGGPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESKES
LPDDILKEID

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family

Homologues:

Organism=Escherichia coli, GI1788688, Length=253, Percent_Identity=41.501976284585, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y718_HAEIN (P44042)

Other databases:

- EMBL:   L42023
- PIR:   F64012
- RefSeq:   NP_438876.1
- GeneID:   949738
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0718
- NMPDR:   fig|71421.1.peg.686
- TIGR:   HI_0718
- HOGENOM:   HBG664050
- OMA:   DAWSFVN
- ProtClustDB:   CLSK870506
- BioCyc:   HINF71421:HI_0718-MONOMER
- InterPro:   IPR007428
- PRINTS:   PR01805

Pfam domain/function: PF04333 VacJ

EC number: NA

Molecular weight: Translated: 28110; Mature: 28110

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKTILTALLSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAK
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
GWNNYVPKPISSGLAGIANNLDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDF
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH
ASASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTPRQLTGAVVDAAYMYPFWQWV
HCCCCCEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
GGPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESKES
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCEECCHHC
LPDDILKEID
CCHHHHHHCC
>Mature Secondary Structure
MKTKTILTALLSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAK
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
GWNNYVPKPISSGLAGIANNLDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDF
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH
ASASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTPRQLTGAVVDAAYMYPFWQWV
HCCCCCEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
GGPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESKES
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCEECCHHC
LPDDILKEID
CCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800