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The map label for this gene is rraB

Identifier: 16272641

GI number: 16272641

Start: 746658

End: 747119

Strand: Reverse

Name: rraB

Synonym: HI0700

Alternate gene names: 16272641

Gene position: 747119-746658 (Counterclockwise)

Preceding gene: 16272652

Following gene: 16272640

Centisome position: 40.82

GC content: 36.58

Gene sequence:

>462_bases
ATGTCAAAATTAGCTGAATTACAAGCAGAAACCCGTGAAATTATCGAAGATTTACTTAATGATGGCAGTGAACCAAATGC
GCTTTACATTATTGAGCATCACATTGCACACCACGATTTTGATTTGTTAGAAAAAATTGCGGTTGATGCGTTTAAAGCGG
GCTATGAAGTTTCCGAAGCGGAAGAATTTAAAGATGATGACGGTAAACCAATTTTCTGTTTTGACATCATCAGTGAAGTA
GAATTAAAAGCTGAAATTATTGATGCTCAACAAAAAGAAATCCTTCCGTTATTAGAAAAACATAATGGTATTTACGACGG
TTGGGGAACTTATTTTGAAGACCCAAATGCCGATGACGATGAATACGGTGACGATGGGGAATTTCTTGATGATGAAGATG
AATACGGTGACGATGGGGAATTTTTTGATGATGAAGATGAAGAAGAGCCTCGTGTTCATTAA

Upstream 100 bases:

>100_bases
GCTCTTTTTTATCGAAAATAATTGTGCGAAATTCTATGCGACTTTTCGTGATTTATCCACTAAAATAACCGCACTTTTGT
TCTTGTTGAAGGATTTTATT

Downstream 100 bases:

>100_bases
TCCGTAAAGTCTTGCGCGCGGAATAATTTTCGCTACAATGGTACGACTTTTTTAACGGATTTTTTATAAGGAAAACATAA
TGAAAGTAGAAAAAAATGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSKLAELQAETREIIEDLLNDGSEPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEV
ELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADDDEYGDDGEFLDDEDEYGDDGEFFDDEDEEEPRVH

Sequences:

>Translated_153_residues
MSKLAELQAETREIIEDLLNDGSEPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEV
ELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADDDEYGDDGEFLDDEDEYGDDGEFFDDEDEEEPRVH
>Mature_152_residues
SKLAELQAETREIIEDLLNDGSEPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEVE
LKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADDDEYGDDGEFLDDEDEYGDDGEFFDDEDEEEPRVH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family

Homologues:

Organism=Escherichia coli, GI1790704, Length=115, Percent_Identity=55.6521739130435, Blast_Score=129, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAB_HAEIN (P44831)

Other databases:

- EMBL:   L42023
- PIR:   T09405
- RefSeq:   NP_438859.1
- ProteinModelPortal:   P44831
- SMR:   P44831
- GeneID:   949725
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0700
- NMPDR:   fig|71421.1.peg.669
- TIGR:   HI_0700
- HOGENOM:   HBG297993
- OMA:   YTIEHHF
- ProtClustDB:   PRK11191
- BioCyc:   HINF71421:HI_0700-MONOMER
- HAMAP:   MF_01888
- InterPro:   IPR009671
- InterPro:   IPR016716
- Gene3D:   G3DSA:3.30.70.970
- PIRSF:   PIRSF018193

Pfam domain/function: PF06877 DUF1260; SSF89946 DUF1260

EC number: NA

Molecular weight: Translated: 17592; Mature: 17461

Theoretical pI: Translated: 3.68; Mature: 3.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAELQAETREIIEDLLNDGSEPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEA
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHH
EEFKDDDGKPIFCFDIISEVELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADDD
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EYGDDGEFLDDEDEYGDDGEFFDDEDEEEPRVH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKLAELQAETREIIEDLLNDGSEPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEA
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHH
EEFKDDDGKPIFCFDIISEVELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADDD
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EYGDDGEFLDDEDEYGDDGEFFDDEDEEEPRVH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023