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The map label for this gene is rarD [C]

Identifier: 16272622

GI number: 16272622

Start: 721436

End: 722332

Strand: Reverse

Name: rarD [C]

Synonym: HI0680

Alternate gene names: 16272622

Gene position: 722332-721436 (Counterclockwise)

Preceding gene: 16272623

Following gene: 16272621

Centisome position: 39.47

GC content: 34.82

Gene sequence:

>897_bases
ATGTTTAAAGGTATTCTCGTTTCATTATTAGCCTCGTTTTTATTTGGCTATATGTATTATTTTTCTACGTTACTAAAACC
TTTGAGTGGCACGGATATTTTCGGTTATCGGATGATATTTACTTTTCCTTTTGTCCTGTTGTCCGTCACATTATTTAAAC
AAAAAGCGGCTTTAATTGAACGTTTAAAACGCATTCAAAAACGACCGCACTTAGCATTGTCATATTTACTTTGCGGATTA
TTAATGGGTTTTCAAATGTGGCTTTTTCTTTGGGCACCGAATAATGGCAGTTCATTAAGTGTATCTTTTGGTTATTTACT
TTTACCAATTGTAATGGTGGCGGCAGGTCGCGTGTTTTTTAAAGAACGCATTTCAACATTCAAATTTATTGCAGTTATCA
TTGCAACATTAGGCGTAATTTCTAATATTGTGCTAAAAGGTGGTCTTTCTTGGGAAGCCATTGTTATCTGTTTAGGTTAC
ACCGCATATTTTTCTATCCGAAAAGCATTAAAAAATACCGATCTTGCCTCCTTTTGTTTAGAAATGTTAAGCCTTATGCC
TGTCAGTATTTATTTTGCTTTACAAACAGATTTCGCGACAGTACAACAAACCAATCCGTTTATTTGGGGGCYGCTTGTAT
TACTAGGATTAATCAGCGGTACTGCGTTAATTGCCTATGTAATAGCCAGTAATATGCTTCCTATGAATTTACTCGGTCTG
CTTGGTTATGTTGAAACTATTATGATGCTATGCGTATCATTTTTGATCGGAGAACAAATTGATAGCGAAAGCTACCCACT
TTTTATTTGTTTAGTCATCGCGATGATTCTTGTTATGGTTGATGGCGTTTACAAACACACGCAAAAGGAAGTTTATAAAT
GCCATTTAAAGAAATAA

Upstream 100 bases:

>100_bases
GGTATTTGCACCCAAAAAAGAAATCTCGAACAGCCCCTAGTCCGTGCATTTTGGGCGATGTTAGAATAGAATAAATAATG
GTTTAAAATAAGGATTTCTT

Downstream 100 bases:

>100_bases
CTCCACAGCAAGCTTGGGAAATGATGCAACAAGGCGCAATATTAGTCGATATTCGAGATAATATGCGCTTTGCTTATTCA
CATCCTAAAGGTGCTTTTCA

Product: RarD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERLKRIQKRPHLALSYLLCGL
LMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGY
TAYFSIRKALKNTDLASFCLEMLSLMPVSIYFALQTDFATVQQTNPFIWGXLVLLGLISGTALIAYVIASNMLPMNLLGL
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKHTQKEVYKCHLKK

Sequences:

>Translated_298_residues
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERLKRIQKRPHLALSYLLCGL
LMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGY
TAYFSIRKALKNTDLASFCLEMLSLMPVSIYFALQTDFATVQQTNPFIWGXLVLLGLISGTALIAYVIASNMLPMNLLGL
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKHTQKEVYKCHLKK
>Mature_298_residues
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIERLKRIQKRPHLALSYLLCGL
LMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFFKERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGY
TAYFSIRKALKNTDLASFCLEMLSLMPVSIYFALQTDFATVQQTNPFIWGXLVLLGLISGTALIAYVIASNMLPMNLLGL
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKHTQKEVYKCHLKK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=26.7796610169492, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y680_HAEIN (Q57389)

Other databases:

- EMBL:   L42023
- PIR:   I64085
- RefSeq:   NP_438840.1
- GeneID:   949717
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0680
- NMPDR:   fig|71421.1.peg.650
- TIGR:   HI_0680
- HOGENOM:   HBG649355
- OMA:   GLLSYVE
- ProtClustDB:   CLSK870434
- BioCyc:   HINF71421:HI_0680-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620
- InterPro:   IPR004626
- TIGRFAMs:   TIGR00688

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 33411; Mature: 33411

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd414a74)-; HASH(0xc363cc8)-; HASH(0xbb42974)-; HASH(0xce2eb44)-; HASH(0xc4a43e0)-; HASH(0xd377a50)-; HASH(0x946f5fc)-; HASH(0xc56cc2c)-; HASH(0xc19cc2c)-; HASH(0xb04d684)-;

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLKRIQKRPHLALSYLLCGLLMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFF
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHHHH
KERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGYTAYFSIRKALKNTDLASFCL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EMLSLMPVSIYFALQTDFATVQQTNPFIWGXLVLLGLISGTALIAYVIASNMLPMNLLGL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKHTQKEVYKCHLKK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MFKGILVSLLASFLFGYMYYFSTLLKPLSGTDIFGYRMIFTFPFVLLSVTLFKQKAALIE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLKRIQKRPHLALSYLLCGLLMGFQMWLFLWAPNNGSSLSVSFGYLLLPIVMVAAGRVFF
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHHHH
KERISTFKFIAVIIATLGVISNIVLKGGLSWEAIVICLGYTAYFSIRKALKNTDLASFCL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EMLSLMPVSIYFALQTDFATVQQTNPFIWGXLVLLGLISGTALIAYVIASNMLPMNLLGL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LGYVETIMMLCVSFLIGEQIDSESYPLFICLVIAMILVMVDGVYKHTQKEVYKCHLKK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800