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The map label for this gene is yibD [C]

Identifier: 16272596

GI number: 16272596

Start: 697403

End: 698167

Strand: Direct

Name: yibD [C]

Synonym: HI0653

Alternate gene names: 16272596

Gene position: 697403-698167 (Clockwise)

Preceding gene: 16272585

Following gene: 16273636

Centisome position: 38.11

GC content: 40.13

Gene sequence:

>765_bases
ATGCCTACAATTAGCGTTGCAATGATTATAAAAAATGAAGCACAAGACCTCGCCAATTGCTTAGATACCGTAAAAGATTG
GGTGGATGAGATTATCATTTTAGATTCTGGCAGCACAGATAACACTAAAGAAATTGCGCTCAGTTATGGGGCGAAATTCT
ATGAAAATAGCGACTGGCAAGGATTTGGTAAACAACGCCAATTAGCCCAACAATATGTAACCAGTGATTATGTACTCTGG
TTAGATGCTGACGAACGCGTTACGCCCAAGTTACAACAGGCTATCTTAAGTGCGGTTAAAAATGATCGAGAAAATACCGT
TTATGAAATTCCACGAGTGAGTGAAGTATTTGGGCGTGAAATTCGCCATTCAGGCTGGTATCCCGATTATGTGGTTCGCC
TCTATCGCACAAACTATGCACAATATAATGATTCACTTGTACATGAAAAAGTGGAATTTCCAGCTGGCACAAAAGTAGAA
AAATTGACAGGGGATTTAGAGCATTTCACTTATAAAAGCATTCATCATTATCTAGTGAAATCCGCAGGTTATGCCAAAGC
ATGGGCAGACCAACGCCAAGCTAAAGGAAAAAAAGCCACACTTTGGCAAGGAATTTCACACGCGCTTGGTTGTTTTGTGA
AGATGTATTTGTTAAAAGCGGGTTTTTTAGATGGCAAACAAGGATTTTTATTAGCGGTGTTATCGGCGCATTCAACCTTT
GTAAAATACGCCGATTTATGGGAGCGCGATCAGCATAAACACTAG

Upstream 100 bases:

>100_bases
CAAATTAAAAGCAAGCTGGTATAAAAAAAACGCCACATAAATGAAATTCGGTTATACTTAAAAAAATTTCGGCTAGTATA
GCAAAAAAAGGATTGAAAAT

Downstream 100 bases:

>100_bases
CTAGTTTTGCAAGGACAATCATTTAAATGATCGTCCACCAGCCCCATAGATTGCATAAACGCATAGCACGTGGTTTCGCC
AATAAAGACGAAACCACGTT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MPTISVAMIIKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQGFGKQRQLAQQYVTSDYVLW
LDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGREIRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVE
KLTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTF
VKYADLWERDQHKH

Sequences:

>Translated_254_residues
MPTISVAMIIKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQGFGKQRQLAQQYVTSDYVLW
LDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGREIRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVE
KLTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTF
VKYADLWERDQHKH
>Mature_253_residues
PTISVAMIIKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQGFGKQRQLAQQYVTSDYVLWL
DADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGREIRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEK
LTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTFV
KYADLWERDQHKH

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y653_HAEIN (P44029)

Other databases:

- EMBL:   L42023
- PIR:   B64011
- RefSeq:   NP_438813.1
- ProteinModelPortal:   P44029
- SMR:   P44029
- GeneID:   950619
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0653
- NMPDR:   fig|71421.1.peg.623
- TIGR:   HI_0653
- HOGENOM:   HBG756167
- OMA:   WVDEIVI
- ProtClustDB:   CLSK870444
- BioCyc:   HINF71421:HI_0653-MONOMER
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: 2.-.-.- [C]

Molecular weight: Translated: 29137; Mature: 29006

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTISVAMIIKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQ
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCHHHCCCCCC
GFGKQRQLAQQYVTSDYVLWLDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGRE
CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHH
IRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEKLTGDLEHFTYKSIHHYLVK
HHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTF
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VKYADLWERDQHKH
HHHHHHHHHCCCCC
>Mature Secondary Structure 
PTISVAMIIKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQ
CCEEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCHHHCCCCCC
GFGKQRQLAQQYVTSDYVLWLDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGRE
CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHH
IRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEKLTGDLEHFTYKSIHHYLVK
HHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTF
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VKYADLWERDQHKH
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800