Click here to switch to the map view.

The map label for this gene is yjjW [C]

Identifier: 16272464

GI number: 16272464

Start: 542912

End: 543700

Strand: Reverse

Name: yjjW [C]

Synonym: HI0520

Alternate gene names: 16272464

Gene position: 543700-542912 (Counterclockwise)

Preceding gene: 16272465

Following gene: 16272463

Centisome position: 29.71

GC content: 39.42

Gene sequence:

>789_bases
ATGACCGCACTTTCTGAGATTTTTGTGCCGTTACATCGGATTATTCCGTTTTCAAATGTAGAGGGGCAAGGCAATCGTTC
GAGTATTTTTCTGCAAGGTTGCAAGCTAAATTGCTTGTATTGCCATAATCCGGAAACCATACCTCGTTATACGGAAAGTG
CGAAATTGGTCAGTTTGCAGTATTTGTATGAACAGGTTATGGAGGCAGTTCCATTTATTCGCGGTGTAACGGTTTCTGGT
GGAGAACCCACTATTCATCACAAAAAACTTGTGCCACTCTTTAAGGCTTTACGTTCGCAAGGATTGACTTGTTATTTGGA
TAGCAGTGGCTTTTTTGAGTTTGATCGTGTTTGTTCGTTAATTGATGTCACTGACAAATTTTTATTTGATCTCAAAGGCG
AGGGCATTGGCTTGCAAACACTTTGTTTTGATCGGAAAAATCAAGCAGGTATTGTACCACAGCAAGTGATACCAGAACGT
TTACATATAAAAAACGATAAACTGGAGCGGAATTTGCAAAATTTAGCTGCCTTGTTGCCATTAAATAAAGTGGAAGAAGT
GCGGTTGGTTTTTTTAAAGCATTTTTTTGATGCTGAACATTTGGTGGGCAAAGTTGCTCAACTACTACGAAATTATCCTG
ATGTGGCATTAAAAATTATCCGCGTGCATAGCAAAGGCGTACGTGATGAAGCTGGGTTATCAGCGTATATCCCAAGTGTG
GAAGAAACTAATGCGCTATCTGCTTATGCGCGTCAATGTGGAATTAACAAGATTTTGACTATTTTATAG

Upstream 100 bases:

>100_bases
ATACAACTTGGTATGGCTCGGGTACGGATGAATGTGCCAATGTGTTTGATCGCCAATTACGCGATGAAAAAGATGTGATC
GCTGAAAAATAATTAGAAAA

Downstream 100 bases:

>100_bases
ACGTTTACAAAAAGTGCGGTGAAAATTCGCCGACTTTTCATAAGAAAACAAGTAGAATAAGCCGAATTTTATTAACTTAA
CTAATCTAGGGGAATCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTALSEIFVPLHRIIPFSNVEGQGNRSSIFLQGCKLNCLYCHNPETIPRYTESAKLVSLQYLYEQVMEAVPFIRGVTVSG
GEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPER
LHIKNDKLERNLQNLAALLPLNKVEEVRLVFLKHFFDAEHLVGKVAQLLRNYPDVALKIIRVHSKGVRDEAGLSAYIPSV
EETNALSAYARQCGINKILTIL

Sequences:

>Translated_262_residues
MTALSEIFVPLHRIIPFSNVEGQGNRSSIFLQGCKLNCLYCHNPETIPRYTESAKLVSLQYLYEQVMEAVPFIRGVTVSG
GEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPER
LHIKNDKLERNLQNLAALLPLNKVEEVRLVFLKHFFDAEHLVGKVAQLLRNYPDVALKIIRVHSKGVRDEAGLSAYIPSV
EETNALSAYARQCGINKILTIL
>Mature_261_residues
TALSEIFVPLHRIIPFSNVEGQGNRSSIFLQGCKLNCLYCHNPETIPRYTESAKLVSLQYLYEQVMEAVPFIRGVTVSGG
EPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPERL
HIKNDKLERNLQNLAALLPLNKVEEVRLVFLKHFFDAEHLVGKVAQLLRNYPDVALKIIRVHSKGVRDEAGLSAYIPSVE
ETNALSAYARQCGINKILTIL

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the organic radical-activating enzymes family

Homologues:

Organism=Escherichia coli, GI1790839, Length=266, Percent_Identity=27.8195488721804, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787130, Length=128, Percent_Identity=35.15625, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y520_HAEIN (P44743)

Other databases:

- EMBL:   L42023
- PIR:   B64154
- RefSeq:   NP_438678.1
- ProteinModelPortal:   P44743
- GeneID:   949583
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0520
- NMPDR:   fig|71421.1.peg.491
- TIGR:   HI_0520
- HOGENOM:   HBG554871
- OMA:   TINTCKA
- ProtClustDB:   CLSK892370
- BioCyc:   HINF71421:HI_0520-MONOMER
- InterPro:   IPR001989
- InterPro:   IPR007197

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 29497; Mature: 29366

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS01087 RADICAL_ACTIVATING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSEIFVPLHRIIPFSNVEGQGNRSSIFLQGCKLNCLYCHNPETIPRYTESAKLVSLQ
CCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHH
YLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDRVCSL
HHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH
IDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPERLHIKNDKLERNLQNLAALLP
HHHHHHHHHHCCCCCCCEEHEEECCCCCCCCCHHHHCHHHHHCCCHHHHHHHHHHHHHCC
LNKVEEVRLVFLKHFFDAEHLVGKVAQLLRNYPDVALKIIRVHSKGVRDEAGLSAYIPSV
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHCCCCC
EETNALSAYARQCGINKILTIL
CHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure 
TALSEIFVPLHRIIPFSNVEGQGNRSSIFLQGCKLNCLYCHNPETIPRYTESAKLVSLQ
CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHH
YLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDRVCSL
HHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH
IDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPERLHIKNDKLERNLQNLAALLP
HHHHHHHHHHCCCCCCCEEHEEECCCCCCCCCHHHHCHHHHHCCCHHHHHHHHHHHHHCC
LNKVEEVRLVFLKHFFDAEHLVGKVAQLLRNYPDVALKIIRVHSKGVRDEAGLSAYIPSV
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHCCCCC
EETNALSAYARQCGINKILTIL
CHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800