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The map label for this gene is atpD [H]

Identifier: 16272426

GI number: 16272426

Start: 500273

End: 501646

Strand: Reverse

Name: atpD [H]

Synonym: HI0479

Alternate gene names: 16272426

Gene position: 501646-500273 (Counterclockwise)

Preceding gene: 16272427

Following gene: 16272425

Centisome position: 27.41

GC content: 40.03

Gene sequence:

>1374_bases
ATGTCAGCAGGAAAAATTGTACAAATCATCGGTGCGGTGATTGACGTTGAATTTCCACAAGATGCAGTGCCAAAAGTTTA
CGATGCATTAAAAGTTGAATCAGGTTTAACACTTGAGGTGCAACAACAATTAGGTGGCGGAGTAGTTCGTTGTATTGCAT
TGGGTACATCTGATGGTTTAAAACGTGGCTTAAAAGTAGAAAACACAAATAACCCAATTCAAGTACCAGTAGGCACAAAA
ACACTTGGTCGTATTATGAATGTGTTGGGCGAACCAATTGACGAACAAGGAGCAATTGGTGAAGAAGAGCGTTGGGCTAT
CCACCGTTCGGCACCGAGCTATGAAGAACAATCAAACAGTACGGAATTATTAGAAACTGGTATCAAAGTGATCGACTTAA
TTTGTCCATTCGCAAAAGGTGGTAAAGTTGGTTTATTCGGCGGTGCAGGTGTAGGTAAAACCGTAAATATGATGGAGTTG
ATTCGTAATATTGCGATTGAGCATTCAGGTTACTCTGTATTTGCGGGTGTAGGCGAACGTACTCGTGAAGGTAATGACTT
CTATCATGAAATGAAAGATTCTAACGTATTAGATAAAGTATCTTTGGTTTATGGTCAAATGAACGAGCCACCAGGTAACC
GTTTACGTGTTGCATTGACTGGTTTAACTATGGCTGAAAAATTCCGTGATGAAGGTCGAGATGTATTATTCTTTGTGGAT
AATATCTATCGTTATACCCTTGCTGGTACGGAAGTATCTGCGTTATTAGGTCGTATGCCATCCGCGGTAGGTTACCAACC
GACATTGGCAGAAGAAATGGGTGTGTTACAAGAACGTATCACTTCAACCAAAACAGGTTCTATCACTTCTGTGCAAGCGG
TGTACGTACCAGCGGATGACTTAACTGACCCATCTCCAGCAACAACTTTCGCACATTTAGACTCAACTGTTGTATTAAGT
CGTCAAATCGCATCTTTAGGTATTTACCCTGCAGTTGATCCATTAGATTCAACTTCACGTCAGCTAGACCCGCTTGTTGT
TGGTCAAGAACATTATGATGTTGCTCGTGGTGTACAAGGTATTTTACAACGTTATAAAGAATTGAAAGATATTATCGCAA
TTCTTGGTATGGATGAATTATCTGAAGAAGATAAACTAGTGGTAGCACGTGCACGTAAAATTGAACGTTTCTTATCACAA
CCATTCTTTGTTGCAGAAGTCTTCACAGGTTCACCAGGTAAATACGTGACATTAAAAGACACCATCCGTGGCTTCAAAGG
TATCTTAGATGGCGAATATGACCATATTCCTGAACAAGCGTTCTATATGGTTGGTTCAATCGATGAAGTGTTAGAAAAAG
CCAAAAATATGTAA

Upstream 100 bases:

>100_bases
CTGCGGTTGGTGTACAACAAAGCTCGTCAAGCAAGTATCACAAATGAATTGAATGAAATCGTAGCCGGTGCGGCGGCGAT
TTAAGAAAAGAGGAACGGTA

Downstream 100 bases:

>100_bases
TCACTTCAAGTCATTTGAAGGAGAACAAAATGGCGACATTTAATTTAACAATAGTAAGCGCAGAGCAGAAAATCTTTGAA
GGTGAAGTAAAACAAATTCA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MSAGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQVPVGTK
TLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLS
RQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQ
PFFVAEVFTGSPGKYVTLKDTIRGFKGILDGEYDHIPEQAFYMVGSIDEVLEKAKNM

Sequences:

>Translated_457_residues
MSAGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQVPVGTK
TLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLS
RQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQ
PFFVAEVFTGSPGKYVTLKDTIRGFKGILDGEYDHIPEQAFYMVGSIDEVLEKAKNM
>Mature_456_residues
SAGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQVPVGTKT
LGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI
RNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDN
IYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSR
QIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQP
FFVAEVFTGSPGKYVTLKDTIRGFKGILDGEYDHIPEQAFYMVGSIDEVLEKAKNM

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=68.4549356223176, Blast_Score=637, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=395, Percent_Identity=25.8227848101266, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=28.0373831775701, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI19913426, Length=395, Percent_Identity=25.3164556962025, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=25.0825082508251, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=25.0825082508251, Blast_Score=101, Evalue=2e-21,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=88.9130434782609, Blast_Score=845, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=346, Percent_Identity=28.3236994219653, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=25.8823529411765, Blast_Score=111, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=68.0257510729614, Blast_Score=635, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=324, Percent_Identity=28.3950617283951, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=406, Percent_Identity=25.8620689655172, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=358, Percent_Identity=25.9776536312849, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=24.4224422442244, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=24.4224422442244, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=331, Percent_Identity=23.2628398791541, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=67.6148796498906, Blast_Score=623, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=388, Percent_Identity=26.8041237113402, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25.5434782608696, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=259, Percent_Identity=27.4131274131274, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.3189655172414, Blast_Score=629, Evalue=1e-180,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=64.3010752688172, Blast_Score=587, Evalue=1e-168,
Organism=Drosophila melanogaster, GI20129479, Length=334, Percent_Identity=26.9461077844311, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281361666, Length=389, Percent_Identity=25.9640102827763, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24646341, Length=389, Percent_Identity=25.9640102827763, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI17136796, Length=389, Percent_Identity=25.9640102827763, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=27.4691358024691, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=26.271186440678, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=26.271186440678, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=26.271186440678, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24658560, Length=338, Percent_Identity=24.8520710059172, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=51.6483516483517, Blast_Score=86, Evalue=7e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49836; Mature: 49704

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQLGGGVVRCIALGTSDGL
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCEEEEEEECCCHHH
KRGLKVENTNNPIQVPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNS
HCCCEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCHHCCCC
TELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
TREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
CCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEE
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADD
CHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
LTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQG
CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHHH
ILQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQPFFVAEVFTGSPGKYVTLKD
HHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHHH
TIRGFKGILDGEYDHIPEQAFYMVGSIDEVLEKAKNM
HHHHHHHCCCCCHHCCCHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
SAGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQLGGGVVRCIALGTSDGL
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCEEEEEEECCCHHH
KRGLKVENTNNPIQVPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNS
HCCCEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCHHCCCC
TELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
TREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
CCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEE
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADD
CHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
LTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQG
CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHHH
ILQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQPFFVAEVFTGSPGKYVTLKD
HHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHHH
TIRGFKGILDGEYDHIPEQAFYMVGSIDEVLEKAKNM
HHHHHHHCCCCCHHCCCHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA