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The map label for this gene is vapD

Identifier: 16272398

GI number: 16272398

Start: 473074

End: 473349

Strand: Reverse

Name: vapD

Synonym: HI0450

Alternate gene names: 16272398

Gene position: 473349-473074 (Counterclockwise)

Preceding gene: 16272399

Following gene: 16272397

Centisome position: 25.86

GC content: 36.59

Gene sequence:

>276_bases
ATGTACGCGATTGCTTTTTTAGTTGTAAAAGACACTCAAGATTATCATCCAAAGGGCGTTCAACAGGCTTATACAGACAT
TGGCGCAGTCTTAGCAAAATTTGGTTTTGTTAGAACACAAGGAAGTTTATATATCAACATGAATGAAGATATGGCGAATC
TCTTTCAGGCAATGAATGCACTAAAACAGTTGGCGTGGATTTCTCAGTCGGTACGAGATATTCGTGCTTTTCGTATTGAG
CAATGGTCTGATTTTACTGATTTTATACGAAATTAA

Upstream 100 bases:

>100_bases
GTGATGTGTTGGTGAATATCACATTGTTACAATCTGGTGAAAAAGACATTTATCGCTTATCTCACCTGCTTGAAGATCCC
GAAGCTGAATAAGGAAAATT

Downstream 100 bases:

>100_bases
CATTTGCCTAGATAAGCCTTACAGGCTTCCTTGCTTAATCCCCTTTAGACAGTATAATGGCGGCGTTTTATTAACTTTAA
TCGGGTATGACTATGTTTAA

Product: virulence-associated protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MYAIAFLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYINMNEDMANLFQAMNALKQLAWISQSVRDIRAFRIE
QWSDFTDFIRN

Sequences:

>Translated_91_residues
MYAIAFLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYINMNEDMANLFQAMNALKQLAWISQSVRDIRAFRIE
QWSDFTDFIRN
>Mature_91_residues
MYAIAFLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYINMNEDMANLFQAMNALKQLAWISQSVRDIRAFRIE
QWSDFTDFIRN

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VAPD_HAEIN (P71351)

Other databases:

- EMBL:   L42023
- PIR:   C64069
- RefSeq:   NP_438611.1
- GeneID:   949544
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0450
- NMPDR:   fig|71421.1.peg.424
- TIGR:   HI_0450
- HOGENOM:   HBG495030
- OMA:   EDMANLF
- ProtClustDB:   CLSK782043
- BioCyc:   HINF71421:HI_0450-MONOMER
- GO:   GO:0009405
- InterPro:   IPR016368
- PIRSF:   PIRSF002882

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10543; Mature: 10543

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAIAFLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYINMNEDMANLFQAMNA
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHH
LKQLAWISQSVRDIRAFRIEQWSDFTDFIRN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure
MYAIAFLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYINMNEDMANLFQAMNA
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHH
LKQLAWISQSVRDIRAFRIEQWSDFTDFIRN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023