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The map label for this gene is psd [H]

Identifier: 16272127

GI number: 16272127

Start: 175737

End: 176609

Strand: Direct

Name: psd [H]

Synonym: HI0160

Alternate gene names: 16272127

Gene position: 175737-176609 (Clockwise)

Preceding gene: 16272117

Following gene: 16272130

Centisome position: 9.6

GC content: 37.11

Gene sequence:

>873_bases
ATGATGACTTCAAATTCTTATTGGCAACGCTTAAAAGTGGCATTTCAATATGTCATGCCACAAATTTATTTAACTCAAAT
TGCTGGCTGGTTTGCTAAACAAAAATGGGGCAAAATAACACATTTTGTAATTAAAGCTTTTGCGAAAAAATACAACATTG
ATATGAGCATTGCGCAAAAAGAACAATTTTCTGATTACGCAAGTTTTAATGAATTTTTTATTCGTCCGTTAAAAGAAAAC
GCACGTCCAATTAATCAAAATCCAACCGCACTTTGTTTACCAGCAGACGGTCGCATTAGTGAGTGCGGTCATATTGACGA
TAATCTTTTATTGCAAGCTAAGGGGCATTTTTTCAGCCTAGAAGACTTATTGGCAGAAGATAAAGAATTAGTGGAAACCT
TTAAAAATGGGGAATTTGTAACTACTTATCTTTCTCCTCGTGATTATCACCGAGTGCATATGCCATGCGATGCTACGCTA
CGCAAAATGATTTATGTGCCGGGTGATTTATTCTCTGTGAACCCATTTTTAGCCCAACATGTACCAAATTTATTTGCACG
TAATGAACGTGTGATTTGTGTATTTGATACTGAATTTGGCACAATGGTACAAATTTTAGTGGGTGCAACCATCACTGCAA
GTATTGGCACAACTTGGGCAGGCGTAATTAATCCTCCACGCCACAACGAAGTGAAAACTTGGACTTATGAAGGCGAAAGT
GCGGTCAAATTATTGAAAGGTCAAGAAATGGGGTGGTTCCAACTTGGTTCGACAGTAATTAATTTATTCCAAGCAAATCA
AGTGCGTTTAGCTGATCATTTAAGCGTTAATGAACCTGTTCGCATGGGCGAAATCTTGGCATATAAAAAATAA

Upstream 100 bases:

>100_bases
ATTGGATAACTCAATAAAGGAAATTATCCGCTAACTAAAAAGGTTGGAACTATAACAAAAATTGCTATAATCACGCCTCT
TTTTTTAACAAGGAAAGATA

Downstream 100 bases:

>100_bases
ACAGGATTTATTTCCATAAATGACAGAAACAAATCCTGAAAGTAGATATTTCTCACTTCTTTAAAGGCAGTATAACCTTA
CTGCCTTTTTCTTCTTTCAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MMTSNSYWQRLKVAFQYVMPQIYLTQIAGWFAKQKWGKITHFVIKAFAKKYNIDMSIAQKEQFSDYASFNEFFIRPLKEN
ARPINQNPTALCLPADGRISECGHIDDNLLLQAKGHFFSLEDLLAEDKELVETFKNGEFVTTYLSPRDYHRVHMPCDATL
RKMIYVPGDLFSVNPFLAQHVPNLFARNERVICVFDTEFGTMVQILVGATITASIGTTWAGVINPPRHNEVKTWTYEGES
AVKLLKGQEMGWFQLGSTVINLFQANQVRLADHLSVNEPVRMGEILAYKK

Sequences:

>Translated_290_residues
MMTSNSYWQRLKVAFQYVMPQIYLTQIAGWFAKQKWGKITHFVIKAFAKKYNIDMSIAQKEQFSDYASFNEFFIRPLKEN
ARPINQNPTALCLPADGRISECGHIDDNLLLQAKGHFFSLEDLLAEDKELVETFKNGEFVTTYLSPRDYHRVHMPCDATL
RKMIYVPGDLFSVNPFLAQHVPNLFARNERVICVFDTEFGTMVQILVGATITASIGTTWAGVINPPRHNEVKTWTYEGES
AVKLLKGQEMGWFQLGSTVINLFQANQVRLADHLSVNEPVRMGEILAYKK
>Mature_290_residues
MMTSNSYWQRLKVAFQYVMPQIYLTQIAGWFAKQKWGKITHFVIKAFAKKYNIDMSIAQKEQFSDYASFNEFFIRPLKEN
ARPINQNPTALCLPADGRISECGHIDDNLLLQAKGHFFSLEDLLAEDKELVETFKNGEFVTTYLSPRDYHRVHMPCDATL
RKMIYVPGDLFSVNPFLAQHVPNLFARNERVICVFDTEFGTMVQILVGATITASIGTTWAGVINPPRHNEVKTWTYEGES
AVKLLKGQEMGWFQLGSTVINLFQANQVRLADHLSVNEPVRMGEILAYKK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=290, Percent_Identity=30.6896551724138, Blast_Score=119, Evalue=3e-27,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=57.3476702508961, Blast_Score=340, Evalue=6e-95,
Organism=Caenorhabditis elegans, GI71980843, Length=296, Percent_Identity=30.4054054054054, Blast_Score=127, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI71980840, Length=296, Percent_Identity=30.4054054054054, Blast_Score=127, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6321609, Length=244, Percent_Identity=31.9672131147541, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=160, Percent_Identity=36.25, Blast_Score=90, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24649526, Length=305, Percent_Identity=29.5081967213115, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24649528, Length=305, Percent_Identity=29.5081967213115, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24649524, Length=305, Percent_Identity=29.5081967213115, Blast_Score=111, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 33198; Mature: 33198

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTSNSYWQRLKVAFQYVMPQIYLTQIAGWFAKQKWGKITHFVIKAFAKKYNIDMSIAQK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHH
EQFSDYASFNEFFIRPLKENARPINQNPTALCLPADGRISECGHIDDNLLLQAKGHFFSL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEH
EDLLAEDKELVETFKNGEFVTTYLSPRDYHRVHMPCDATLRKMIYVPGDLFSVNPFLAQH
HHHHHCCHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHEECCCCCEECCHHHHHH
VPNLFARNERVICVFDTEFGTMVQILVGATITASIGTTWAGVINPPRHNEVKTWTYEGES
HHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCEEEEECCHH
AVKLLKGQEMGWFQLGSTVINLFQANQVRLADHLSVNEPVRMGEILAYKK
HHHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MMTSNSYWQRLKVAFQYVMPQIYLTQIAGWFAKQKWGKITHFVIKAFAKKYNIDMSIAQK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHH
EQFSDYASFNEFFIRPLKENARPINQNPTALCLPADGRISECGHIDDNLLLQAKGHFFSL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEH
EDLLAEDKELVETFKNGEFVTTYLSPRDYHRVHMPCDATLRKMIYVPGDLFSVNPFLAQH
HHHHHCCHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHEECCCCCEECCHHHHHH
VPNLFARNERVICVFDTEFGTMVQILVGATITASIGTTWAGVINPPRHNEVKTWTYEGES
HHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCEEEEECCHH
AVKLLKGQEMGWFQLGSTVINLFQANQVRLADHLSVNEPVRMGEILAYKK
HHHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA