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The map label for this gene is yceD [C]

Identifier: 16272126

GI number: 16272126

Start: 175056

End: 175580

Strand: Reverse

Name: yceD [C]

Synonym: HI0159

Alternate gene names: 16272126

Gene position: 175580-175056 (Counterclockwise)

Preceding gene: 16272128

Following gene: 16272125

Centisome position: 9.59

GC content: 40.95

Gene sequence:

>525_bases
ATGCAAAAGGTAAAACTACCCCTCACTGTTGATCCCATAAAAGATGCTCAAAGACGGCTTGATTATGTTGGTTATTATGC
GGCAAATCAGCTTGAGCGTTTGGCGGAATCAGTGGTAAACGTGCTCAGCGATGCACAGGTAACATTATCGTTTTATGTTG
ATCCACAAAAATTAGTGGTGATGAAAGGTAAAGTACAGATTGATGTCGATCTTGAATGTCAGCGTTGTAACGAACCTTAC
AAACAAACATTGGAATGTGAGTTTACTTATAGTCCAGTGGCTAATTGGGATCAGGCTGATGACTTGCCCGAAATTTATGA
GCCAATCGAGTTCAATGAGTTTGGCGAAATAGATTTAATTGGCACGGTGGAAGATGAGCTAATTTTAGCTTTGCCGCTTG
TACCAATGCATTCATCTGAACACTGTGAAGTGTCCGCGCAGGAACAGGTTTTTGGCGTATTGCCTGAAGAATTGGCAAAA
AAACCGAACCCGTTCGCTGTATTAGCTAATTTAAAGCAAAAGTAA

Upstream 100 bases:

>100_bases
ACCTTTTTAGTTAGCGGATAATTTCCTTTATTGAGTTATCCAATAAAAAATGTGATTTCCCTTTGACTATCTTCGCAACA
ACAGGTAATATTCACGCCCT

Downstream 100 bases:

>100_bases
ATTAAATTTAGGAGTATAGCCAATGGCTGTTCAACAAAACAAAAAATCTCGTTCACGTCGTGATATGCGTCGTTCACACG
ATGCTTTAACAACTGCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQKVKLPLTVDPIKDAQRRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQIDVDLECQRCNEPY
KQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGVLPEELAK
KPNPFAVLANLKQK

Sequences:

>Translated_174_residues
MQKVKLPLTVDPIKDAQRRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQIDVDLECQRCNEPY
KQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGVLPEELAK
KPNPFAVLANLKQK
>Mature_174_residues
MQKVKLPLTVDPIKDAQRRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQIDVDLECQRCNEPY
KQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGVLPEELAK
KPNPFAVLANLKQK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yceD

Homologues:

Organism=Escherichia coli, GI1787329, Length=174, Percent_Identity=60.3448275862069, Blast_Score=219, Evalue=7e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y159_HAEIN (P43790)

Other databases:

- EMBL:   U20229
- EMBL:   L42023
- PIR:   H64051
- RefSeq:   NP_438329.1
- GeneID:   951069
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0159
- NMPDR:   fig|71421.1.peg.150
- TIGR:   HI_0159
- HOGENOM:   HBG730729
- OMA:   HVDPRKL
- ProtClustDB:   PRK11193
- BioCyc:   HINF71421:HI_0159-MONOMER
- InterPro:   IPR003772

Pfam domain/function: PF02620 DUF177

EC number: NA

Molecular weight: Translated: 19744; Mature: 19744

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKLPLTVDPIKDAQRRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQKLVV
CCEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE
MKGKVQIDVDLECQRCNEPYKQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLI
EECEEEEEEECCHHHCCCCHHCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEE
GTVEDELILALPLVPMHSSEHCEVSAQEQVFGVLPEELAKKPNPFAVLANLKQK
EECCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHCCCCCCEEEEECCCCC
>Mature Secondary Structure
MQKVKLPLTVDPIKDAQRRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQKLVV
CCEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE
MKGKVQIDVDLECQRCNEPYKQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLI
EECEEEEEEECCHHHCCCCHHCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEE
GTVEDELILALPLVPMHSSEHCEVSAQEQVFGVLPEELAKKPNPFAVLANLKQK
EECCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800