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The map label for this gene is sotB [H]

Identifier: 16272102

GI number: 16272102

Start: 149017

End: 150207

Strand: Direct

Name: sotB [H]

Synonym: HI0135

Alternate gene names: 16272102

Gene position: 149017-150207 (Clockwise)

Preceding gene: 16272101

Following gene: 16272105

Centisome position: 8.14

GC content: 38.96

Gene sequence:

>1191_bases
ATGTCGTTATATTTAAAAGCTGAAAAAATCCAATCATGGCGCGTGCTTATTATGGCTTGCGCAGGATTTATTTTTAATAC
TACAGAATTTGTACCCGTTGCAATGTTAAGCGATATTGCACAAAGTTTTGATATGCAAACCGCCGATACTGGTTTAATGA
TGACAGTTTATGCTTGGACGGTGCTAATTATGTCTTTGCCTGCGATGCTTGCCACGGGCAATATGGAACGTAAAAGTCTG
CTTATTAAGCTTTTCATTATATTTATTGTTGGGCATATTTTATCGGTCATTGCATGGAATTTCTGGATATTACTTCTCGC
TCGAATGTGTATTGCATTAGCACATTCGGTGTTTTGGTCAATTACTGCCTCACTTGTGATGCGCATCTCACCTAAACACA
AGAAAACTCAAGCATTAGGAATGCTCGCTATTGGCACCGCACTTGCCACAATCTTAGGCTTACCGATTGGACGAATTGTC
GGACAGCTCGTCGGTTGGCGGGTCACTTTTGGCATTATTGCGGTACTGGCATTATCCATCATGTTTTTAATTATTCGATT
ATTGCCAAATTTACCCAGTAAAAATGCTGGCTCTATTGCAAGTTTACCCTTGCTTGCTAAACGTCCATTATTACTTTGGC
TTTACGTAACAACGGCAATCGTCATTTCAGCACACTTTACTGCTTATACTTATATCGAACCATTTATGATTGATGTAGGG
CATTTAGATCCAAATTTTGCCACGGCTGTATTATTAGTTTTTGGTTTCTCAGGCATTGCAGCAAGCCTATTATTTAACAG
ATTATACCGATTTGCTCCCACAAAATTTATTGTTGTTTCGATGAGTTTATTGATGTTCTCCCTCTTGCTACTCCTCTTTT
CGACCAAAACAATAATAGCAATGTTCAGCCTTGTGTTTATTTGGGGGATTGGCATTTCTTGTATCGGACTATCTCTACAA
ATGCGCGTACTAAAACTTGCGCCAGATGCAACCGATGTTGCCACAGCTATTTACTCGGGCATTTTCAATGCAGGAATTGG
CGCAGGCGCATTATTTGGAAACCTTGCGACAACCTATTTAGGATTAAATGAAATTGGTTATACAGGCGCAGCATTAGGTT
TAATCGGTTTCATCATTTTTATTACAACGCACTTAAAATATCGCCATACATTTCTTCTGCAAAACAAATAA

Upstream 100 bases:

>100_bases
TCAATTTTTTTGGTAACTGCAATTCTCCACAATACAAAATTAATTTTACGAAGAAATTCCGCCATCAATTAATTGATGCG
ATTAAAGAAAAGTTACGTTA

Downstream 100 bases:

>100_bases
AAAAATAACCGCACTTTAGTTCTCCAAAAAGAGTTTTAAAAGTGCGGTTAAATCTTGCTAAGTTTTATTTATCTTGCGTT
TAACGTTTCGCTTTCTTAAT

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSL
LIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIV
GQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTKTIIAMFSLVFIWGIGISCIGLSLQ
MRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK

Sequences:

>Translated_396_residues
MSLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSL
LIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIV
GQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTKTIIAMFSLVFIWGIGISCIGLSLQ
MRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK
>Mature_395_residues
SLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSLL
IKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVG
QLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVGH
LDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTKTIIAMFSLVFIWGIGISCIGLSLQM
RVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=364, Percent_Identity=51.6483516483517, Blast_Score=336, Evalue=1e-93,
Organism=Escherichia coli, GI1787947, Length=337, Percent_Identity=29.080118694362, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI145693198, Length=337, Percent_Identity=26.4094955489614, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1786595, Length=349, Percent_Identity=22.3495702005731, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43361; Mature: 43230

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWT
CCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVGQLVGWRVTFGIIAVLALSI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HHHHHHHHCCCCCCCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTKTIIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFSLVFIWGIGISCIGLSLQMRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
SLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWT
CEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVGQLVGWRVTFGIIAVLALSI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVG
HHHHHHHHCCCCCCCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
HLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTKTIIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFSLVFIWGIGISCIGLSLQMRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLNEIGYTGAALGLIGFIIFITTHLKYRHTFLLQNK
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA