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The map label for this gene is dcd [H]

Identifier: 16272100

GI number: 16272100

Start: 147251

End: 147838

Strand: Direct

Name: dcd [H]

Synonym: HI0133

Alternate gene names: 16272100

Gene position: 147251-147838 (Clockwise)

Preceding gene: 16272099

Following gene: 16272101

Centisome position: 8.05

GC content: 40.96

Gene sequence:

>588_bases
ATGCGTCTTTGCGATACTGATATTGAACGCTATCTTGATGATGGCATTATTTCTTTAACACCACGTCCAAATAATGACAA
AATCAACGGTGCGACAATTGATGTTCGCTTGGGGAATTCTTTCCGTGTATTTCGTGAACACTCTGCACCTTTTATTGATC
TAAGCGGCCCGAAAGAAGAAGTATCCGCCCAGCTTGAATCAGTAATGAGCGATGAAATTATTATTCCAGAGGGGGAAGCA
TTTTTCTTACATCCTGGTACTTTAGCCTTAGCAACCACGCTTGAATCCGTGAAATTGCCAGCCAATATTATCGGTTGGTT
AGATGGCCGTTCTTCTTTAGCCCGTTTAGGCTTAATGGTACACGTCACCGCACACCGTATTGATCCAGGTTGGGAAGGAA
AAATCGTGCTGGAATTTTATAATTCAGGGAAATTACCATTAGCATTACGCCCAAATATGGTAATTGGTGCGTTAAGTTTT
GAAGTATTAAGTGGCGAASSAAAACGACCATACAGTAGCCGCAAAGATGCAAAATATAAAAATCAACAAAGTGCAGTAGC
CAGTCGTATTGACGAAGACAAGGAATAA

Upstream 100 bases:

>100_bases
ATGCGGATATTGTCATTCCTCGTGGTGGTAAAAATCGCATTGCGATCAATATGTTAAAAGCTCAAATCCTTCATTTATTG
AATCAAAAATAGGAAATCTT

Downstream 100 bases:

>100_bases
TCGATGAAAAAGTTCGCACTTATCGTAGGGATCGTCGCTTTGGCGATCTTTTCTTTTTTATATATTCAACTTTACCGCGT
GCAAAGTGCTATTAATGAAC

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MRLCDTDIERYLDDGIISLTPRPNNDKINGATIDVRLGNSFRVFREHSAPFIDLSGPKEEVSAQLESVMSDEIIIPEGEA
FFLHPGTLALATTLESVKLPANIIGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFYNSGKLPLALRPNMVIGALSF
EVLSGEXKRPYSSRKDAKYKNQQSAVASRIDEDKE

Sequences:

>Translated_195_residues
MRLCDTDIERYLDDGIISLTPRPNNDKINGATIDVRLGNSFRVFREHSAPFIDLSGPKEEVSAQLESVMSDEIIIPEGEA
FFLHPGTLALATTLESVKLPANIIGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFYNSGKLPLALRPNMVIGALSF
EVLSGEXKRPYSSRKDAKYKNQQSAVASRIDEDKE
>Mature_195_residues
MRLCDTDIERYLDDGIISLTPRPNNDKINGATIDVRLGNSFRVFREHSAPFIDLSGPKEEVSAQLESVMSDEIIIPEGEA
FFLHPGTLALATTLESVKLPANIIGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFYNSGKLPLALRPNMVIGALSF
EVLSGEXKRPYSSRKDAKYKNQQSAVASRIDEDKE

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788379, Length=193, Percent_Identity=76.1658031088083, Blast_Score=308, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962
- InterPro:   IPR010550 [H]

Pfam domain/function: PF06559 DCD [H]

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 21564; Mature: 21564

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLCDTDIERYLDDGIISLTPRPNNDKINGATIDVRLGNSFRVFREHSAPFIDLSGPKEE
CCCCHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEECCCEEEEECCCCCEEECCCCHHH
VSAQLESVMSDEIIIPEGEAFFLHPGTLALATTLESVKLPANIIGWLDGRSSLARLGLMV
HHHHHHHHHCCCEEECCCCEEEECCCCEEEHHHHHHHCCCHHHEEECCCHHHHHHHCEEE
HVTAHRIDPGWEGKIVLEFYNSGKLPLALRPNMVIGALSFEVLSGEXKRPYSSRKDAKYK
EEEEEECCCCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCC
NQQSAVASRIDEDKE
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLCDTDIERYLDDGIISLTPRPNNDKINGATIDVRLGNSFRVFREHSAPFIDLSGPKEE
CCCCHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEECCCEEEEECCCCCEEECCCCHHH
VSAQLESVMSDEIIIPEGEAFFLHPGTLALATTLESVKLPANIIGWLDGRSSLARLGLMV
HHHHHHHHHCCCEEECCCCEEEECCCCEEEHHHHHHHCCCHHHEEECCCHHHHHHHCEEE
HVTAHRIDPGWEGKIVLEFYNSGKLPLALRPNMVIGALSFEVLSGEXKRPYSSRKDAKYK
EEEEEECCCCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCC
NQQSAVASRIDEDKE
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA