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The map label for this gene is yggS [C]

Identifier: 16272064

GI number: 16272064

Start: 97196

End: 97909

Strand: Direct

Name: yggS [C]

Synonym: HI0090

Alternate gene names: 16272064

Gene position: 97196-97909 (Clockwise)

Preceding gene: 16272057

Following gene: 16272070

Centisome position: 5.31

GC content: 38.38

Gene sequence:

>714_bases
ATGAATATCCAGCATAATCTCAACCTAATTCAGCAAAAAATTGAAACGGCTTGTAAAGAAGAAAATCGCAATCAAAATAC
CGTAAAATTACTTGCCGTATCTAAGACCAAACCTATTTCTGCTATTCTTTCGGCTTATCAAGCGGGACAAACGGCTTTTG
GGGAAAATTACGTGCAAGAGGGGGTAGAAAAGATCCAATATTTTGAATCGCAAGGAATTAACCTTGAATGGCATTTTATC
GGCCCATTACAATCGAATAAAACCCGTCTCGTTGCAGAACATTTTGATTGGATGCAAACGCTTGATCGAGCAAAAATTGC
AGATCGTTTAAATGAACAACGACCGACCAACAAGGCTCCATTGAATGTATTGATTCAGATTAATATCAGCGATGAAGAAA
GTAAATCAGGTATTCAACCTGAGGAAATGCTAACACTAGCAAAACACATCGAAAATTTACCGCACTTATGCCTACGTGGC
TTAATGGCAATACCCGCACCAACCGACAACATCGCAGAACAAGAAAATGCATTTAGAAAGATGTTGGAGCTGTTTGAACA
ACTTAAACAAGTCTTACCCAATCAACAAATTGATACACTTTCTATGGGAATGACGGATGATATGCCGAGCGCAATAAAAT
GCGGTTCTACAATGGTACGCATTGGCACTGCGATTTTTGGTGCGAGAAATTATTCAACATCACAAAATAAATAA

Upstream 100 bases:

>100_bases
TTCCCGAGCTTGTCAAACAGAAAGTGACAAATTTTTCAGAAATTTTCTTAGTCAATAAATTTCGTGTAAACTAACCGCAC
TTTTTTATAAAGGAAAACCT

Downstream 100 bases:

>100_bases
TCATGGAATAAGGCCCGAATTTAAAACAAGCCTTATTTCTTAATGAAATTTAAATGCCAGTACTCTCGCCACATTTTGAG
CGGTAGAAATTAAATTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFI
GPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRG
LMAIPAPTDNIAEQENAFRKMLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQNK

Sequences:

>Translated_237_residues
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFI
GPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRG
LMAIPAPTDNIAEQENAFRKMLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQNK
>Mature_237_residues
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFI
GPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRG
LMAIPAPTDNIAEQENAFRKMLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQNK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=39.7489539748954, Blast_Score=144, Evalue=7e-35,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=61.2068965517241, Blast_Score=279, Evalue=1e-76,
Organism=Caenorhabditis elegans, GI17533025, Length=216, Percent_Identity=37.037037037037, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=37.7272727272727, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=40.3755868544601, Blast_Score=139, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y090_HAEIN (P44506)

Other databases:

- EMBL:   L42023
- PIR:   B64142
- RefSeq:   NP_438263.1
- ProteinModelPortal:   P44506
- SMR:   P44506
- GeneID:   950992
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0090
- NMPDR:   fig|71421.1.peg.89
- TIGR:   HI_0090
- HOGENOM:   HBG289671
- OMA:   HGSTMVR
- ProtClustDB:   CLSK869970
- BioCyc:   HINF71421:HI_0090-MONOMER
- InterPro:   IPR001608
- InterPro:   IPR011078
- PANTHER:   PTHR10146
- PIRSF:   PIRSF004848
- TIGRFAMs:   TIGR00044

Pfam domain/function: PF01168 Ala_racemase_N

EC number: NA

Molecular weight: Translated: 26767; Mature: 26767

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH
GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP
HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQENAFRK
EEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQNK
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH
GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP
HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQENAFRK
EEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQNK
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023