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The map label for this gene is fdhD [H]

Identifier: 16271981

GI number: 16271981

Start: 4579

End: 5391

Strand: Reverse

Name: fdhD [H]

Synonym: HI0005

Alternate gene names: 16271981

Gene position: 5391-4579 (Counterclockwise)

Preceding gene: 16271985

Following gene: 16271980

Centisome position: 0.29

GC content: 36.41

Gene sequence:

>813_bases
ATGCAGTGCTGGATTCGACAAACTATCAACTTTTTTAGAAAGACAAAAAATACAGAAAAATTGACCGCACTTTTGCAACA
AAAAGAGGACATACTGGCTGTTGAGATACCAGTTTCTTTGGTATATAACGGCATTTCTCACGCAGTTATGATGTGTTCCC
CAAACAATTTAGAGGATTTTGCTTTAGGCTTTTCTCTAACAGAGGGAATTATCAATAAACCAGAAGATATTTATGGTATT
GATGTTGTAGAAGTTTGCAATGGTATTGAAGTGCAAATTGAACTTTCCAGCCGTAAATTTATGGCATTAAAAGAGCATCG
TCGTAATCTTACGGGGCGTACTGGTTGTGGTATTTGTGGTACAGAACAATTGAATCAAGTATATAAAACTTTTCCGAAAT
TAGACTGTACTTTTCAATTTGATTTAAATTTGCTAGATAGTTGTCTTATTGATCTTCAAAAAAATCAATTGCTTGGATGT
AAAACTGGTGCTACCCATGCTTGTGCATTTTTCGATTTATATGGAAGTATGTTAGCTATTTACGAAGATGTGGGTCGCCA
CGTTGCATTAGATAAATTGCTTGGTTGGCACGCAAAATCGGGTAAACCTAGAGGTTTTATTTTAGCCTCCAGTCGAGCGA
GTTATGAAATGGTGCAAAAAACAGTGGCTTGCGGGGTGGAAATGTTAGTCACGATTTCTGCCGCAACGGATTTAGCAGTA
ACAATGGCAGAAAAACATAATTTGACTTTAATTGGTTTTGCTAGGGAAGGAAAAGGAAATATTTATAGCGGACATCTACG
ACTTCACAATTAA

Upstream 100 bases:

>100_bases
TAATCAAATGACATTAGCTTCAACAAATATTGTGATCTAGATCATAAATATAAAAATAATTTAACAGACTTTTTACATTT
AACTAATGGACTGGTAATAA

Downstream 100 bases:

>100_bases
CCTCAACCAAGAGCGAGAGATTTGAGGTTTTGTGTTGATTAAGGAAATAGCGTGATTTGTCTCTTTGTACGTTAAAAATA
GAGTAAATTAGCGGTAAACA

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MQCWIRQTINFFRKTKNTEKLTALLQQKEDILAVEIPVSLVYNGISHAVMMCSPNNLEDFALGFSLTEGIINKPEDIYGI
DVVEVCNGIEVQIELSSRKFMALKEHRRNLTGRTGCGICGTEQLNQVYKTFPKLDCTFQFDLNLLDSCLIDLQKNQLLGC
KTGATHACAFFDLYGSMLAIYEDVGRHVALDKLLGWHAKSGKPRGFILASSRASYEMVQKTVACGVEMLVTISAATDLAV
TMAEKHNLTLIGFAREGKGNIYSGHLRLHN

Sequences:

>Translated_270_residues
MQCWIRQTINFFRKTKNTEKLTALLQQKEDILAVEIPVSLVYNGISHAVMMCSPNNLEDFALGFSLTEGIINKPEDIYGI
DVVEVCNGIEVQIELSSRKFMALKEHRRNLTGRTGCGICGTEQLNQVYKTFPKLDCTFQFDLNLLDSCLIDLQKNQLLGC
KTGATHACAFFDLYGSMLAIYEDVGRHVALDKLLGWHAKSGKPRGFILASSRASYEMVQKTVACGVEMLVTISAATDLAV
TMAEKHNLTLIGFAREGKGNIYSGHLRLHN
>Mature_270_residues
MQCWIRQTINFFRKTKNTEKLTALLQQKEDILAVEIPVSLVYNGISHAVMMCSPNNLEDFALGFSLTEGIINKPEDIYGI
DVVEVCNGIEVQIELSSRKFMALKEHRRNLTGRTGCGICGTEQLNQVYKTFPKLDCTFQFDLNLLDSCLIDLQKNQLLGC
KTGATHACAFFDLYGSMLAIYEDVGRHVALDKLLGWHAKSGKPRGFILASSRASYEMVQKTVACGVEMLVTISAATDLAV
TMAEKHNLTLIGFAREGKGNIYSGHLRLHN

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=249, Percent_Identity=57.8313253012048, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30044; Mature: 30044

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCWIRQTINFFRKTKNTEKLTALLQQKEDILAVEIPVSLVYNGISHAVMMCSPNNLEDF
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCHHCEEEEECCCCHHHH
ALGFSLTEGIINKPEDIYGIDVVEVCNGIEVQIELSSRKFMALKEHRRNLTGRTGCGICG
HHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCC
TEQLNQVYKTFPKLDCTFQFDLNLLDSCLIDLQKNQLLGCKTGATHACAFFDLYGSMLAI
HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHH
YEDVGRHVALDKLLGWHAKSGKPRGFILASSRASYEMVQKTVACGVEMLVTISAATDLAV
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHCEEE
TMAEKHNLTLIGFAREGKGNIYSGHLRLHN
EEECCCCEEEEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MQCWIRQTINFFRKTKNTEKLTALLQQKEDILAVEIPVSLVYNGISHAVMMCSPNNLEDF
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCHHCEEEEECCCCHHHH
ALGFSLTEGIINKPEDIYGIDVVEVCNGIEVQIELSSRKFMALKEHRRNLTGRTGCGICG
HHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCC
TEQLNQVYKTFPKLDCTFQFDLNLLDSCLIDLQKNQLLGCKTGATHACAFFDLYGSMLAI
HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHH
YEDVGRHVALDKLLGWHAKSGKPRGFILASSRASYEMVQKTVACGVEMLVTISAATDLAV
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHCEEE
TMAEKHNLTLIGFAREGKGNIYSGHLRLHN
EEECCCCEEEEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA