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The map label for this gene is nqrD [H]

Identifier: 162447822

GI number: 162447822

Start: 993466

End: 994125

Strand: Direct

Name: nqrD [H]

Synonym: ACL_0968

Alternate gene names: 162447822

Gene position: 993466-994125 (Clockwise)

Preceding gene: 162447821

Following gene: 162447823

Centisome position: 66.36

GC content: 36.36

Gene sequence:

>660_bases
ATGGAAAACAATCAATCAATCTTACCTAAACCAAGTCGCTGGTTAAGACTCCAATACAAAAAATGGTTTCTCATACTTAA
AAATGGTATTTCAGAAGAAAACCCAATTATTGTCTCAGTATTAGGTATCTGTTCAGCACTTGCTGTTACAAATAGAGTAG
AAAATGCAATCGTCATGGGTATTGGTGTTACATTCGTTATCATGGCTTCTTCTATGATGGTCTCTATGATGCGTAATCTC
ATCCCTTCAAAGGTACGTATGGTAGCTTTCATGGTTATTATTTCAATGTTTACTATCGTAGTTCAAATGTTCTTACAAGC
ATTCCTACCTGTAGTTGCTGCAAACCTTGGTGCATATACTGGTTTAATTATCACAAACTGTATTGTTATGGGTAGAGCAG
AAGCATTTGCTATCAAAAATCCTGTTAAATATACTATTATTGACGGTTTTGCTAACGGTATGGGTTATACCTTAGTATTA
ATTGCAATCGCTGCAGTTCGTGAGCCTTTAGCATTTGGAACATTCCTTGGTATGAGTATCCCTGGTTTTGATAACTGGAT
TAACTGGAACGTTATGGCGTTAGCACCTGGTGGTTTCTTCGTATTAACCTTATTAGCATGGTTAGTGCGTACATTAACCA
AGAAATATGAAGAAGCGTAG

Upstream 100 bases:

>100_bases
GATGGTTATGGTGGAGCTACTACAACTAAGGCTTCTATGTTAAACATTTTAAATGAGACAGTAGCAGCATACAAATTAGC
ATTTGCGGTGGAGGCATAAT

Downstream 100 bases:

>100_bases
GAGGAGATAAAACATGGAATTAATTGAATTATTCTTAGCATCAATACTATCAAATAACATCGCCTTGATCTTCATTTTAG
GGATGTGTTCATTAATCGCT

Product: Na+-transporting NADH:ubiquinone oxidoreductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MENNQSILPKPSRWLRLQYKKWFLILKNGISEENPIIVSVLGICSALAVTNRVENAIVMGIGVTFVIMASSMMVSMMRNL
IPSKVRMVAFMVIISMFTIVVQMFLQAFLPVVAANLGAYTGLIITNCIVMGRAEAFAIKNPVKYTIIDGFANGMGYTLVL
IAIAAVREPLAFGTFLGMSIPGFDNWINWNVMALAPGGFFVLTLLAWLVRTLTKKYEEA

Sequences:

>Translated_219_residues
MENNQSILPKPSRWLRLQYKKWFLILKNGISEENPIIVSVLGICSALAVTNRVENAIVMGIGVTFVIMASSMMVSMMRNL
IPSKVRMVAFMVIISMFTIVVQMFLQAFLPVVAANLGAYTGLIITNCIVMGRAEAFAIKNPVKYTIIDGFANGMGYTLVL
IAIAAVREPLAFGTFLGMSIPGFDNWINWNVMALAPGGFFVLTLLAWLVRTLTKKYEEA
>Mature_219_residues
MENNQSILPKPSRWLRLQYKKWFLILKNGISEENPIIVSVLGICSALAVTNRVENAIVMGIGVTFVIMASSMMVSMMRNL
IPSKVRMVAFMVIISMFTIVVQMFLQAFLPVVAANLGAYTGLIITNCIVMGRAEAFAIKNPVKYTIIDGFANGMGYTLVL
IAIAAVREPLAFGTFLGMSIPGFDNWINWNVMALAPGGFFVLTLLAWLVRTLTKKYEEA

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=151, Percent_Identity=35.0993377483444, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787914, Length=158, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24195; Mature: 24195

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNQSILPKPSRWLRLQYKKWFLILKNGISEENPIIVSVLGICSALAVTNRVENAIVMG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
IGVTFVIMASSMMVSMMRNLIPSKVRMVAFMVIISMFTIVVQMFLQAFLPVVAANLGAYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIITNCIVMGRAEAFAIKNPVKYTIIDGFANGMGYTLVLIAIAAVREPLAFGTFLGMSI
HHHHHHHHHHCCHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGFDNWINWNVMALAPGGFFVLTLLAWLVRTLTKKYEEA
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENNQSILPKPSRWLRLQYKKWFLILKNGISEENPIIVSVLGICSALAVTNRVENAIVMG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
IGVTFVIMASSMMVSMMRNLIPSKVRMVAFMVIISMFTIVVQMFLQAFLPVVAANLGAYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIITNCIVMGRAEAFAIKNPVKYTIIDGFANGMGYTLVLIAIAAVREPLAFGTFLGMSI
HHHHHHHHHHCCHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGFDNWINWNVMALAPGGFFVLTLLAWLVRTLTKKYEEA
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA