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The map label for this gene is yrvN [H]

Identifier: 162447688

GI number: 162447688

Start: 864311

End: 865549

Strand: Direct

Name: yrvN [H]

Synonym: ACL_0830

Alternate gene names: 162447688

Gene position: 864311-865549 (Clockwise)

Preceding gene: 162447673

Following gene: 162447689

Centisome position: 57.74

GC content: 33.82

Gene sequence:

>1239_bases
ATGGAACCACTAGCAAGTCGCATGCGACCTAAAAATTTTGATGAAGTATATGGACAAGACCATTTACTAAGTAAACATGG
CGTATTAACCAAAATGATAGAAAAGAAAAAGTACTTATCTTTTATCTTATATGGGCCACCAGGTACAGGTAAAACGACAA
TCGCAAAACTCTTTTCTGACAAATCCATGTTAGACACTTATTTTTTTAATGCTTCAACTGACAACAAAGCTAAATTAAAA
GATATTTTAGACATGACAGCATATCATGATGTACTTATTATTGTGGATGAGATTCATCGTATGAAAACAGACATTCAAGA
CTACCTTTTACCATTTTTAGAAAGCGGTAAGGCCATTATGATTGGTTTAACAACACTTAACCCATATCAAAGTATTAATA
TGGCGATTCGTAGTCGTTGTCATTTATATGAAATTAAAGCACTTAGTGATAAAGATATTGAAGCAGCTATACTCAATGCA
ATTCAATATTTAGATCATGATATACACCTGACAGATGATGCACTTGCAGCAATCATTAGAGCATCTAATTCTGAAATTCG
TTCAGCTCTTAATTTACTTGAAAGTGCCTCATTAGTGGTTGATGACGGACAAAAAATTACTTCTAACATCATAAGAAAAC
TTGCTGGTAAACCTCAACTATCCTTAGATGATCATGAAAACCACTATTTTGAAATGCTAAGTGCACTTCAAAAATCTATT
CGAGGTTCTGATGTAGATGCCTCAATTCACTATCTTGCAAGATTATTAACACTAGGTGATTTAGAAATTATTTTTAGAAG
ATTGATTGTGATTGCATATGAAGATATCGGACTAGCAAACCCTACGATGGGTCAAAAGGTTTTAGCAGCCATTCAAGCTG
CTAAAATGACAGGATTACCTGAGGCAAGAATCCCTTTATCTGTCATCGTTGTCGACATGGCATTATCTCCTAAATCTAAC
ACTGCTTATAGTGCACTTGATAAGGCTATGGAAGATTTCCAAAATGGTTTAGCAGGACCGATACCAAAACATATTGATAA
CAAATATATTAAACAACATCCAGATAGCTACAAATACCCACATAACGATCCAGGTTCATTAAATAGTCAAACACACTTAC
CTGATAACTTGCTGGATAAAACGTATTATGTACCTAAAGATGAAAGTGCTTACGAAAAAGCACTAAAAGATCGCTTAAAA
CTCATTGATAGTATCAAAGGGTATAAAAGGAAAGGATAA

Upstream 100 bases:

>100_bases
TTGGTCACAGTATTTAACCTATATGTGATAACCCTCACGAAATTACATAACAACTATTTTCAAGTACCAAACATGATATA
ATAAATCAGGAGGATCAATC

Downstream 100 bases:

>100_bases
TTCTTATGTTAAAAAATAAACATATACTTACAATTGTTTCAAATGATTATGATGATTTAGAGTTTCATTATCCACTCATT
AGACTTAAAGAGGCAGGTGC

Product: Holliday junction DNA helicase-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MEPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYLSFILYGPPGTGKTTIAKLFSDKSMLDTYFFNASTDNKAKLK
DILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGKAIMIGLTTLNPYQSINMAIRSRCHLYEIKALSDKDIEAAILNA
IQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKITSNIIRKLAGKPQLSLDDHENHYFEMLSALQKSI
RGSDVDASIHYLARLLTLGDLEIIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMTGLPEARIPLSVIVVDMALSPKSN
TAYSALDKAMEDFQNGLAGPIPKHIDNKYIKQHPDSYKYPHNDPGSLNSQTHLPDNLLDKTYYVPKDESAYEKALKDRLK
LIDSIKGYKRKG

Sequences:

>Translated_412_residues
MEPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYLSFILYGPPGTGKTTIAKLFSDKSMLDTYFFNASTDNKAKLK
DILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGKAIMIGLTTLNPYQSINMAIRSRCHLYEIKALSDKDIEAAILNA
IQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKITSNIIRKLAGKPQLSLDDHENHYFEMLSALQKSI
RGSDVDASIHYLARLLTLGDLEIIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMTGLPEARIPLSVIVVDMALSPKSN
TAYSALDKAMEDFQNGLAGPIPKHIDNKYIKQHPDSYKYPHNDPGSLNSQTHLPDNLLDKTYYVPKDESAYEKALKDRLK
LIDSIKGYKRKG
>Mature_412_residues
MEPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYLSFILYGPPGTGKTTIAKLFSDKSMLDTYFFNASTDNKAKLK
DILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGKAIMIGLTTLNPYQSINMAIRSRCHLYEIKALSDKDIEAAILNA
IQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKITSNIIRKLAGKPQLSLDDHENHYFEMLSALQKSI
RGSDVDASIHYLARLLTLGDLEIIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMTGLPEARIPLSVIVVDMALSPKSN
TAYSALDKAMEDFQNGLAGPIPKHIDNKYIKQHPDSYKYPHNDPGSLNSQTHLPDNLLDKTYYVPKDESAYEKALKDRLK
LIDSIKGYKRKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=396, Percent_Identity=29.5454545454545, Blast_Score=176, Evalue=5e-44,
Organism=Homo sapiens, GI18426904, Length=396, Percent_Identity=27.020202020202, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI4506491, Length=236, Percent_Identity=25.8474576271186, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI31881687, Length=236, Percent_Identity=25.8474576271186, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI1787119, Length=408, Percent_Identity=32.5980392156863, Blast_Score=220, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=32.7146171693735, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6324039, Length=234, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322528, Length=244, Percent_Identity=28.6885245901639, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI18859927, Length=216, Percent_Identity=26.3888888888889, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17647857, Length=271, Percent_Identity=23.6162361623616, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46220; Mature: 46220

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYLSFILYGPPGTGKTTIAKLFSD
CCCHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHCC
KSMLDTYFFNASTDNKAKLKDILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGKAIM
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IGLTTLNPYQSINMAIRSRCHLYEIKALSDKDIEAAILNAIQYLDHDIHLTDDALAAIIR
EEEECCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHH
ASNSEIRSALNLLESASLVVDDGQKITSNIIRKLAGKPQLSLDDHENHYFEMLSALQKSI
CCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
RGSDVDASIHYLARLLTLGDLEIIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMTGLP
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
EARIPLSVIVVDMALSPKSNTAYSALDKAMEDFQNGLAGPIPKHIDNKYIKQHPDSYKYP
CCCCCCEEEEEEHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHCCCCCCCCC
HNDPGSLNSQTHLPDNLLDKTYYVPKDESAYEKALKDRLKLIDSIKGYKRKG
CCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYLSFILYGPPGTGKTTIAKLFSD
CCCHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHCC
KSMLDTYFFNASTDNKAKLKDILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGKAIM
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IGLTTLNPYQSINMAIRSRCHLYEIKALSDKDIEAAILNAIQYLDHDIHLTDDALAAIIR
EEEECCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHH
ASNSEIRSALNLLESASLVVDDGQKITSNIIRKLAGKPQLSLDDHENHYFEMLSALQKSI
CCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
RGSDVDASIHYLARLLTLGDLEIIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMTGLP
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
EARIPLSVIVVDMALSPKSNTAYSALDKAMEDFQNGLAGPIPKHIDNKYIKQHPDSYKYP
CCCCCCEEEEEEHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHCCCCCCCCC
HNDPGSLNSQTHLPDNLLDKTYYVPKDESAYEKALKDRLKLIDSIKGYKRKG
CCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]