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The map label for this gene is 162447489

Identifier: 162447489

GI number: 162447489

Start: 654237

End: 654665

Strand: Direct

Name: 162447489

Synonym: ACL_0628

Alternate gene names: NA

Gene position: 654237-654665 (Clockwise)

Preceding gene: 162447488

Following gene: 162447490

Centisome position: 43.7

GC content: 33.57

Gene sequence:

>429_bases
GTGAAAGTTAAATACTTGATATTAACAATTGTAGGATCTTTAGGTTCCTTAGCCTCATACCTATTTGGAGGATTTGATAA
ATTGTTAATTGCACTCATAATCTTCATGATTATTGATTTTCTATCTGGTTTAATCTTAGCAATCGTATTTAAAAAGAGTA
GCAAAACAAAGAGCGGCAGAGTGAGTAGTGAAGCAGGTATTAAAGGACTGGCCAAGAAAATATTCATTCTCTTTTTAGTT
GCTTTAGCTGAACAACTAGACATTGTTTTAGGTACTAATCTTGTAAGGGATGGAGCCGTTATTGCTTTCATATCTATGGA
AGGTGTAAGTATCTTAGAAAATTCAACCCTTGCAGGATTACCAGTTCCAAGAATGATTAAAAACGCACTTGAAGTGCTAA
GTAAAGGTGAGGATAAGAAAGATGAATAA

Upstream 100 bases:

>100_bases
ATAAGAAAAACTGGGATAAGGACTTAAACACACCTGACCACTTAAACCAGTTAAAAACATATCTTGATGAAATAATTACA
ATTAGAGAAGGTTTGAGAAA

Downstream 100 bases:

>100_bases
TACAGAATTAATTACCACAATTATCAGTGTGATACTTTCACTCGTATCTATCGGATTAGGTTACTGGTCAAAAAGAAACT
CTAAAGCAAAAGTATACTAT

Product: phage-related holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKVKYLILTIVGSLGSLASYLFGGFDKLLIALIIFMIIDFLSGLILAIVFKKSSKTKSGRVSSEAGIKGLAKKIFILFLV
ALAEQLDIVLGTNLVRDGAVIAFISMEGVSILENSTLAGLPVPRMIKNALEVLSKGEDKKDE

Sequences:

>Translated_142_residues
MKVKYLILTIVGSLGSLASYLFGGFDKLLIALIIFMIIDFLSGLILAIVFKKSSKTKSGRVSSEAGIKGLAKKIFILFLV
ALAEQLDIVLGTNLVRDGAVIAFISMEGVSILENSTLAGLPVPRMIKNALEVLSKGEDKKDE
>Mature_142_residues
MKVKYLILTIVGSLGSLASYLFGGFDKLLIALIIFMIIDFLSGLILAIVFKKSSKTKSGRVSSEAGIKGLAKKIFILFLV
ALAEQLDIVLGTNLVRDGAVIAFISMEGVSILENSTLAGLPVPRMIKNALEVLSKGEDKKDE

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 15246; Mature: 15246

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKYLILTIVGSLGSLASYLFGGFDKLLIALIIFMIIDFLSGLILAIVFKKSSKTKSGR
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VSSEAGIKGLAKKIFILFLVALAEQLDIVLGTNLVRDGAVIAFISMEGVSILENSTLAGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCHHHHCCCCCCCC
PVPRMIKNALEVLSKGEDKKDE
CHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKVKYLILTIVGSLGSLASYLFGGFDKLLIALIIFMIIDFLSGLILAIVFKKSSKTKSGR
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VSSEAGIKGLAKKIFILFLVALAEQLDIVLGTNLVRDGAVIAFISMEGVSILENSTLAGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCHHHHCCCCCCCC
PVPRMIKNALEVLSKGEDKKDE
CHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]