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The map label for this gene is nusB [H]

Identifier: 162447338

GI number: 162447338

Start: 499278

End: 499658

Strand: Direct

Name: nusB [H]

Synonym: ACL_0475

Alternate gene names: 162447338

Gene position: 499278-499658 (Clockwise)

Preceding gene: 162447337

Following gene: 162447339

Centisome position: 33.35

GC content: 27.56

Gene sequence:

>381_bases
ATGCAAAAGACACAAACACAATATAAAAAACTAATGGAAGTGATGTATCAATATAGTTTACACAAGCATGTTGATTTTTT
AGATTACACATTACTTGAAGATGCATCCAAAGAAGTTATTAACGGCATGATAGATGAATTAGAACATGTAGATTTTTTAA
TTTCATCAACAATCAAAAACTACACAATTGATCGTTTAAATTTAGTAGATTTAGCAATTATTAGAGTCGCGGTATACGCA
CTTTTAAAAGAAATCGATCCGGCTGAAATCGTGATTAACGAAGCCATTGAATTATCCAAGGAATATACAGATTTAGATGA
TGAAAAGCAACACAAATTTAACAATAGTTTAATTGATAATATATATAAAAAAATTAAGTAG

Upstream 100 bases:

>100_bases
CTATTAGGTTTTTTTATTAAACATAAATCATCGTGTATTATGTCACATAAGCGCATATTTATACCAGTTTTATGTTAAAA
TACATTTGAGGTAAATAATT

Downstream 100 bases:

>100_bases
GGCATATGAACGAACAAAAGTATTTAAGCGTTTCGGCACTAACTGAATATATTAAAGTCAAATTAGAAAATGATAACCAT
CTTAAACGCGTATTTTTAAA

Product: transcription antitermination factor

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MQKTQTQYKKLMEVMYQYSLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYA
LLKEIDPAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDNIYKKIK

Sequences:

>Translated_126_residues
MQKTQTQYKKLMEVMYQYSLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYA
LLKEIDPAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDNIYKKIK
>Mature_126_residues
MQKTQTQYKKLMEVMYQYSLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYA
LLKEIDPAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDNIYKKIK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:
GO:0003723: Transcription antitermination factor
GO:0006355: Transcription antitermination factor

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 14842; Mature: 14842

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTQTQYKKLMEVMYQYSLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTIKN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTIDRLNLVDLAIIRVAVYALLKEIDPAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IYKKIK
HHHHCC
>Mature Secondary Structure
MQKTQTQYKKLMEVMYQYSLHKHVDFLDYTLLEDASKEVINGMIDELEHVDFLISSTIKN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTIDRLNLVDLAIIRVAVYALLKEIDPAEIVINEAIELSKEYTDLDDEKQHKFNNSLIDN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IYKKIK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA