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The map label for this gene is yciR [C]

Identifier: 162447315

GI number: 162447315

Start: 473811

End: 474977

Strand: Direct

Name: yciR [C]

Synonym: ACL_0451

Alternate gene names: 162447315

Gene position: 473811-474977 (Clockwise)

Preceding gene: 162447314

Following gene: 162447317

Centisome position: 31.65

GC content: 29.99

Gene sequence:

>1167_bases
ATGAATGTAGAAAATCTTTTTAGTATCATGATAGTTGTTTTCGCTGCAATTATAGCTTTATCACTAGCTGTAACACACCG
TTATGTGAAAACAATTTATCGGGGCATAAATTTTTTAGCCATGGGTGTAGTGGGGCATATTATCGGATTTATAATTTATA
TTGGTCTTTATATACAGACTGATTGGATCAAATACTTTATTGGAAATGGTATCTTTTTATCAGGTACTTTTTTGCTGCAT
AAAGGTTTAAACCAGTTTATGGAACGAGAAGTGAGTTACAAAAGAGCATATAGTATCTTAAGCATTGGCGTTATTCTTGG
TATCTTATTTTTCTTTTTTGAACCTAATTTAGTGTATCGTCAAAACTTAATCTCGTTTTTAATTATTTACCTTGTGGTAG
AGATATTAAATAGTGTCATTAAATCTACCGATAAAATAAAAGCTACCCTAAAGTTTCCAATCTATGTATTTTGTACACTA
TTTCTACTACTTATGATGGCACGCTTTATCGCAGTGAATAATCATATAATATTAGAATTGATTCCAGGCCAAGACTTTAC
TTATAATTTTTTATCAAATATTATTGGTGGTATCTTATTTGTAGTATTAGGTTTTATGATTTCTGTAATTATTAATATTA
GAGCAATAACCGATTTGAAAATAGAACGTGCCCTAATGGAAAAAATCTCAGTAACAGATCACTTAACTGGTTTACCAAAC
CGTTTAGCTTTAGAAAAGTATGTATCTAAAATAGAACATAATGGTCAACCTTATGCAGTCATCATTGCAGACATTGATGA
ATTTAAGAAAATAAATGATACCTATGGTCATATGATTGGTGATAAAGTAATTGTAGAATTTTCTAAAGCGTTACTTAATT
TAAATGATGATCGTATGTTTACAGCAAGATATGGCGGTGATGAATTTGTCACAATTGTTAAACGCTTTGAATCAGTAGAC
ACATTAAAGAGTAATATTGCTAAGACAATTAGTACGATAGGCACACAAATTAAAGTCAATGAGCATCATTTTAATTTAAC
CCTCTCAGTTGGTGTTGCAATCTATCCTCATCATGGTACTGAAATTTATGAACTTATTCATAAAGCAGATGCAGCTTTAG
GGGATATTAAAACAAGTGGTAAAAACAGTATAAGGTTTTATGTATAA

Upstream 100 bases:

>100_bases
TAAACGTAAGACTTATTAGAGATATTTTATAAATTGTTGTGATACAATGACTTATCAAATTAAATCAACTTTGTTTTAGT
ACGGGAGAGGTACTAGTAAA

Downstream 100 bases:

>100_bases
AAAAGGACCATCTTTCATTCGAAAGGTGATCCTTTTTGTTTTATTTTTTAGCTAACATGCGTAAACCATTTAAGATAACT
AATATGGTAGAACCTTCATG

Product: membrane-anchored GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MNVENLFSIMIVVFAAIIALSLAVTHRYVKTIYRGINFLAMGVVGHIIGFIIYIGLYIQTDWIKYFIGNGIFLSGTFLLH
KGLNQFMEREVSYKRAYSILSIGVILGILFFFFEPNLVYRQNLISFLIIYLVVEILNSVIKSTDKIKATLKFPIYVFCTL
FLLLMMARFIAVNNHIILELIPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLPN
RLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRMFTARYGGDEFVTIVKRFESVD
TLKSNIAKTISTIGTQIKVNEHHFNLTLSVGVAIYPHHGTEIYELIHKADAALGDIKTSGKNSIRFYV

Sequences:

>Translated_388_residues
MNVENLFSIMIVVFAAIIALSLAVTHRYVKTIYRGINFLAMGVVGHIIGFIIYIGLYIQTDWIKYFIGNGIFLSGTFLLH
KGLNQFMEREVSYKRAYSILSIGVILGILFFFFEPNLVYRQNLISFLIIYLVVEILNSVIKSTDKIKATLKFPIYVFCTL
FLLLMMARFIAVNNHIILELIPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLPN
RLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRMFTARYGGDEFVTIVKRFESVD
TLKSNIAKTISTIGTQIKVNEHHFNLTLSVGVAIYPHHGTEIYELIHKADAALGDIKTSGKNSIRFYV
>Mature_388_residues
MNVENLFSIMIVVFAAIIALSLAVTHRYVKTIYRGINFLAMGVVGHIIGFIIYIGLYIQTDWIKYFIGNGIFLSGTFLLH
KGLNQFMEREVSYKRAYSILSIGVILGILFFFFEPNLVYRQNLISFLIIYLVVEILNSVIKSTDKIKATLKFPIYVFCTL
FLLLMMARFIAVNNHIILELIPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLPN
RLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRMFTARYGGDEFVTIVKRFESVD
TLKSNIAKTISTIGTQIKVNEHHFNLTLSVGVAIYPHHGTEIYELIHKADAALGDIKTSGKNSIRFYV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=31.7647058823529, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=175, Percent_Identity=33.7142857142857, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=33.1428571428571, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=151, Percent_Identity=32.4503311258278, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=29.2134831460674, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081881, Length=233, Percent_Identity=29.6137339055794, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=246, Percent_Identity=28.8617886178862, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=26.2886597938144, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=185, Percent_Identity=28.1081081081081, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43990; Mature: 43990

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVENLFSIMIVVFAAIIALSLAVTHRYVKTIYRGINFLAMGVVGHIIGFIIYIGLYIQT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DWIKYFIGNGIFLSGTFLLHKGLNQFMEREVSYKRAYSILSIGVILGILFFFFEPNLVYR
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QNLISFLIIYLVVEILNSVIKSTDKIKATLKFPIYVFCTLFLLLMMARFIAVNNHIILEL
HHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLPN
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRMF
HHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TARYGGDEFVTIVKRFESVDTLKSNIAKTISTIGTQIKVNEHHFNLTLSVGVAIYPHHGT
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEEEEEEEEECCCCH
EIYELIHKADAALGDIKTSGKNSIRFYV
HHHHHHHHHHHHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MNVENLFSIMIVVFAAIIALSLAVTHRYVKTIYRGINFLAMGVVGHIIGFIIYIGLYIQT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DWIKYFIGNGIFLSGTFLLHKGLNQFMEREVSYKRAYSILSIGVILGILFFFFEPNLVYR
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QNLISFLIIYLVVEILNSVIKSTDKIKATLKFPIYVFCTLFLLLMMARFIAVNNHIILEL
HHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLPN
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRMF
HHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TARYGGDEFVTIVKRFESVDTLKSNIAKTISTIGTQIKVNEHHFNLTLSVGVAIYPHHGT
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEEEEEEEEECCCCH
EIYELIHKADAALGDIKTSGKNSIRFYV
HHHHHHHHHHHHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]