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The map label for this gene is ydaM [H]

Identifier: 162447311

GI number: 162447311

Start: 468193

End: 469269

Strand: Direct

Name: ydaM [H]

Synonym: ACL_0447

Alternate gene names: 162447311

Gene position: 468193-469269 (Clockwise)

Preceding gene: 162447310

Following gene: 162447313

Centisome position: 31.28

GC content: 28.51

Gene sequence:

>1077_bases
ATGTTCATTAAATCTATGATTAAGGGTCTATTTTTTAATATGAACCCTTTATTTGAACGTAATAAGCATGACATTATACG
TTACAATAAACAACTAATACCTATCGCATTTATTTTTTCATTGGTTACTATTTTAATCCCAATGTTTTTTTCACTATTTA
GACCATCCATGCTAGAAACCTTACCGGCTTATCTAGTTATATTTAGTGTTTTTATACTTTTACTTATCCTATTTAACTTT
AAACCATTTCATGAAAAACCTTTAGTGTTTGCTTATACATTTGGTATTGTTTTCTTTATATTTGTAGTATACCTAAGTAT
AGATAGATTTCAATCTAGACCAGCTGGTACTGCACTCATATTCTTTGTTGTTGCACCTATAATATTTGTAGATAAACCAT
ATAAGATAAACATCTATTTAGTGTTAATGTTTATTATTCATACGATATTATCTTTTCAATATAAGACGTTTGATATAGCC
TCAGTTGATTTATTAAACACATTTATCAGTCTTGTAGCTGGCATGTTATTTGGTAGAATCTTCTTAGTCACTAGATTGAA
AAATTTTGATATACACAGAGCACTTTTAATAGAAAGAGAAACAGACTTTTTAACAGGTCTACCAAACCGCCGATCACTAT
TTGAATATGCTCAAAAAGATACATTTAAGGCATATAATTATATGGGTCTTATGATGTTTGATATAGACCGTTTTAAAAAG
TATAACGATAACTATGGTCACTTAAATGGCGATCAAGTACTTACAGAATTTGCACGACTATTAGAAGTGTTTTCTAAAAC
ATACCCAGTAAAATTTTACCGATATGGTGGTGAGGAGTTTATTGGAATCACGTACAACCTAGATAAATTAGAAATCATCA
ACCTAGCAAATCATATTAAAATGGATACCTTTAAATTGAAAGTACCGTTTGAACAAATCACTACAAGTATTGGTGTTACT
GTTACAGATAAAACTGATAATATAGATATAAATGATTTGATAGAACAAGCAGATAAAGCATTATACTCTGGTAAAAACAG
TGGTAGAAATAAAGTGATTTTTTACGAGAAAAAATAA

Upstream 100 bases:

>100_bases
TATCATCAAGTAAGTCAAATGTTTACAGTAATTAACGATAATGTGAAATTTATTAATTTATAGTGTATAATAAAACGAAT
CATTTTTTGGGAGAGAAAGC

Downstream 100 bases:

>100_bases
ATAAAAGTATAAGAAAAGGGCAGTTGTTTTTAGTGTGAACAGCTGCCCTTATTATTTAACTATTTAAACGCGTTTATATG
GTGTATAGCTTTTTTGAGGT

Product: membrane-anchored GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MFIKSMIKGLFFNMNPLFERNKHDIIRYNKQLIPIAFIFSLVTILIPMFFSLFRPSMLETLPAYLVIFSVFILLLILFNF
KPFHEKPLVFAYTFGIVFFIFVVYLSIDRFQSRPAGTALIFFVVAPIIFVDKPYKINIYLVLMFIIHTILSFQYKTFDIA
SVDLLNTFISLVAGMLFGRIFLVTRLKNFDIHRALLIERETDFLTGLPNRRSLFEYAQKDTFKAYNYMGLMMFDIDRFKK
YNDNYGHLNGDQVLTEFARLLEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIKMDTFKLKVPFEQITTSIGVT
VTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYEKK

Sequences:

>Translated_358_residues
MFIKSMIKGLFFNMNPLFERNKHDIIRYNKQLIPIAFIFSLVTILIPMFFSLFRPSMLETLPAYLVIFSVFILLLILFNF
KPFHEKPLVFAYTFGIVFFIFVVYLSIDRFQSRPAGTALIFFVVAPIIFVDKPYKINIYLVLMFIIHTILSFQYKTFDIA
SVDLLNTFISLVAGMLFGRIFLVTRLKNFDIHRALLIERETDFLTGLPNRRSLFEYAQKDTFKAYNYMGLMMFDIDRFKK
YNDNYGHLNGDQVLTEFARLLEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIKMDTFKLKVPFEQITTSIGVT
VTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYEKK
>Mature_358_residues
MFIKSMIKGLFFNMNPLFERNKHDIIRYNKQLIPIAFIFSLVTILIPMFFSLFRPSMLETLPAYLVIFSVFILLLILFNF
KPFHEKPLVFAYTFGIVFFIFVVYLSIDRFQSRPAGTALIFFVVAPIIFVDKPYKINIYLVLMFIIHTILSFQYKTFDIA
SVDLLNTFISLVAGMLFGRIFLVTRLKNFDIHRALLIERETDFLTGLPNRRSLFEYAQKDTFKAYNYMGLMMFDIDRFKK
YNDNYGHLNGDQVLTEFARLLEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIKMDTFKLKVPFEQITTSIGVT
VTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYEKK

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=157, Percent_Identity=36.3057324840764, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=36.2573099415205, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=34.7560975609756, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787541, Length=159, Percent_Identity=31.4465408805031, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=32.5, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=30.6748466257669, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786584, Length=248, Percent_Identity=27.0161290322581, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=31.4285714285714, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=30.9677419354839, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081977, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 42012; Mature: 42012

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIKSMIKGLFFNMNPLFERNKHDIIRYNKQLIPIAFIFSLVTILIPMFFSLFRPSMLET
CCHHHHHHHHHCCCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LPAYLVIFSVFILLLILFNFKPFHEKPLVFAYTFGIVFFIFVVYLSIDRFQSRPAGTALI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
FFVVAPIIFVDKPYKINIYLVLMFIIHTILSFQYKTFDIASVDLLNTFISLVAGMLFGRI
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHH
FLVTRLKNFDIHRALLIERETDFLTGLPNRRSLFEYAQKDTFKAYNYMGLMMFDIDRFKK
HHHHHHCCCCHHHHHEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNDNYGHLNGDQVLTEFARLLEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIK
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHHCE
MDTFKLKVPFEQITTSIGVTVTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYEKK
EEEEEEECCHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure
MFIKSMIKGLFFNMNPLFERNKHDIIRYNKQLIPIAFIFSLVTILIPMFFSLFRPSMLET
CCHHHHHHHHHCCCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LPAYLVIFSVFILLLILFNFKPFHEKPLVFAYTFGIVFFIFVVYLSIDRFQSRPAGTALI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
FFVVAPIIFVDKPYKINIYLVLMFIIHTILSFQYKTFDIASVDLLNTFISLVAGMLFGRI
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHH
FLVTRLKNFDIHRALLIERETDFLTGLPNRRSLFEYAQKDTFKAYNYMGLMMFDIDRFKK
HHHHHHCCCCHHHHHEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNDNYGHLNGDQVLTEFARLLEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIK
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHHCE
MDTFKLKVPFEQITTSIGVTVTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYEKK
EEEEEEECCHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]