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The map label for this gene is rnfC [H]

Identifier: 162446934

GI number: 162446934

Start: 58416

End: 59714

Strand: Direct

Name: rnfC [H]

Synonym: ACL_0048

Alternate gene names: 162446934

Gene position: 58416-59714 (Clockwise)

Preceding gene: 162446933

Following gene: 162446935

Centisome position: 3.9

GC content: 34.33

Gene sequence:

>1299_bases
TTGATCACAAGAACAAGATATATACCTGATGGTAAAGATGTTTTAAAGAAACTACCATTAATCCATCACTTAGAAGCACC
ATATTTATACTATCCAATTACAAACCAAAGATGCCCGGAAGGTGAAACTTGCGTCGTTTTTGGTCAATTTGTTAAAGTTG
GTGAGGTTATTGGTACAAGAAAGGGTGCTTTCTTTGAGCAACCAATTCACTCAACAGTTAGTGGTGAAGTTGTCGGGCAT
GAAATGAAGTTTGATGCTTCAGGAAAACGTGTAAACTGTATGATTGTTAAAAACGACTTCAAATATGAATTACATGAGTC
TGTTAAAACAAGAACTGATGAAGAAATAGACAAACTTACTAAAGAAGATTACGTAAATATTACTAAAGAAGCGGGTTTAG
TTGGTCTAGGTGGTTCAGGATTCCCAACATATATTAAACTAAACACTAAAAATAAAATAGACATTATCTTAGCAAACGGT
GTGGAGTGTGAGCCTAAATTAATTTCAGACTATGAAGTTATGATGGAAAGCCCGGATGAACTTATTAGAGGTTTAATCTA
TGCAATGAAAGCTGTTGGTGCACCAAAAGGTGTAATTGCAGTTAAGAAAAGATATGTGGAATTAGTAGAAAGAATCCGTT
TTTCTCTAAACTCATATACTGAATATGACATCAAAGTTGTACCAGTTGGTAACCACTATCCACAAGGTTGGGAGTTAGAA
GCAATTGAAGCGGCTACAGGTATTAAGGTACCTCAATTTAAACTTCCAGCGGATTACGGTATTATTCCATTTAACGTTTC
TACCTTACAATCTATTTATCATGCAGTGAAGTTTAACTTACCTGTACTAGAAAGATACTTTGTATTATCAGGTGATGGTG
TTGTAAACAAATCATTTAAAGCTAGAATTGGTACTCCAATTCAAAGTTTAATTCAACTTGCTGGTGGTTATGTAGATAAG
GCAGTGCCTAAAACATTAATCATGGGTGGGCCAATGATGGGTAGTAACGTAACAAATGATGATATTGTTACAACACACAC
AGCAACATCATTAATTGTTCAAAACTCACTTTTATTAAACGAAGATCCTTGTATCCACTGTGCAAGCTGTGTATACTCTT
GCCCAGTACAAATACAACCGGTTCAAATTATGAATGCTGTGAAAGCAAACGATAAAGATTTCTTAAAAGCTTTATCAGTT
AATAAATGTATTGAATGTGGATTATGTTCATTTGTATGTCCATCTAAGATTCATTTAACAGATTACATGCGTGAAGGTAA
ACGCATCTTAAGAGGTTAA

Upstream 100 bases:

>100_bases
GAAGTGTTATCGAATATAAACAATGAAGAAGTTATCAATAAAGTTAAAAAAGAAGTACTAAAACTAATGAAAGATGTTAA
ATGAAAAGGAGTGATTTTCT

Downstream 100 bases:

>100_bases
TTATGCAAAATATATCTATTTTAAGCCAAACATCACCGTATATACGTAAAGAAACTTCTACAAAACGTATGATGTTTGAT
GTGTTAATTGCACTAACGCC

Product: NADH oxidoreductase complex RnfABCDGE type, C subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MITRTRYIPDGKDVLKKLPLIHHLEAPYLYYPITNQRCPEGETCVVFGQFVKVGEVIGTRKGAFFEQPIHSTVSGEVVGH
EMKFDASGKRVNCMIVKNDFKYELHESVKTRTDEEIDKLTKEDYVNITKEAGLVGLGGSGFPTYIKLNTKNKIDIILANG
VECEPKLISDYEVMMESPDELIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFSLNSYTEYDIKVVPVGNHYPQGWELE
AIEAATGIKVPQFKLPADYGIIPFNVSTLQSIYHAVKFNLPVLERYFVLSGDGVVNKSFKARIGTPIQSLIQLAGGYVDK
AVPKTLIMGGPMMGSNVTNDDIVTTHTATSLIVQNSLLLNEDPCIHCASCVYSCPVQIQPVQIMNAVKANDKDFLKALSV
NKCIECGLCSFVCPSKIHLTDYMREGKRILRG

Sequences:

>Translated_432_residues
MITRTRYIPDGKDVLKKLPLIHHLEAPYLYYPITNQRCPEGETCVVFGQFVKVGEVIGTRKGAFFEQPIHSTVSGEVVGH
EMKFDASGKRVNCMIVKNDFKYELHESVKTRTDEEIDKLTKEDYVNITKEAGLVGLGGSGFPTYIKLNTKNKIDIILANG
VECEPKLISDYEVMMESPDELIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFSLNSYTEYDIKVVPVGNHYPQGWELE
AIEAATGIKVPQFKLPADYGIIPFNVSTLQSIYHAVKFNLPVLERYFVLSGDGVVNKSFKARIGTPIQSLIQLAGGYVDK
AVPKTLIMGGPMMGSNVTNDDIVTTHTATSLIVQNSLLLNEDPCIHCASCVYSCPVQIQPVQIMNAVKANDKDFLKALSV
NKCIECGLCSFVCPSKIHLTDYMREGKRILRG
>Mature_432_residues
MITRTRYIPDGKDVLKKLPLIHHLEAPYLYYPITNQRCPEGETCVVFGQFVKVGEVIGTRKGAFFEQPIHSTVSGEVVGH
EMKFDASGKRVNCMIVKNDFKYELHESVKTRTDEEIDKLTKEDYVNITKEAGLVGLGGSGFPTYIKLNTKNKIDIILANG
VECEPKLISDYEVMMESPDELIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFSLNSYTEYDIKVVPVGNHYPQGWELE
AIEAATGIKVPQFKLPADYGIIPFNVSTLQSIYHAVKFNLPVLERYFVLSGDGVVNKSFKARIGTPIQSLIQLAGGYVDK
AVPKTLIMGGPMMGSNVTNDDIVTTHTATSLIVQNSLLLNEDPCIHCASCVYSCPVQIQPVQIMNAVKANDKDFLKALSV
NKCIECGLCSFVCPSKIHLTDYMREGKRILRG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:
GO:0005886: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0009055: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0010181: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0016020: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0016491: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0016651: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0046872: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0051287: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0051536: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0051539: NADH oxidoreductase complex RnfABCDGE type, C subunit
GO:0055114: NADH oxidoreductase complex RnfABCDGE type, C subunit

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=433, Percent_Identity=27.2517321016166, Blast_Score=166, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48022; Mature: 48022

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRTRYIPDGKDVLKKLPLIHHLEAPYLYYPITNQRCPEGETCVVFGQFVKVGEVIGTR
CCCCCCCCCCHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHCC
KGAFFEQPIHSTVSGEVVGHEMKFDASGKRVNCMIVKNDFKYELHESVKTRTDEEIDKLT
CCCHHHCCHHHCCCCCEECEEEEECCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHH
KEDYVNITKEAGLVGLGGSGFPTYIKLNTKNKIDIILANGVECEPKLISDYEVMMESPDE
HHHHHEEHHHCCEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCHHCCHHHHHCCHHH
LIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFSLNSYTEYDIKVVPVGNHYPQGWELE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEE
AIEAATGIKVPQFKLPADYGIIPFNVSTLQSIYHAVKFNLPVLERYFVLSGDGVVNKSFK
EEHHHCCCCCCCEECCCCCCEEECCHHHHHHHHHHHHCCCCHHEEEEEEECCCEECCCHH
ARIGTPIQSLIQLAGGYVDKAVPKTLIMGGPMMGSNVTNDDIVTTHTATSLIVQNSLLLN
HHCCCHHHHHHHHHCCHHHHHCCHHEEECCCCCCCCCCCCCEEEEEHHHHHHHCCCEEEC
EDPCIHCASCVYSCPVQIQPVQIMNAVKANDKDFLKALSVNKCIECGLCSFVCPSKIHLT
CCCCHHHHHHHHHCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCHHH
DYMREGKRILRG
HHHHHHHHHHCC
>Mature Secondary Structure
MITRTRYIPDGKDVLKKLPLIHHLEAPYLYYPITNQRCPEGETCVVFGQFVKVGEVIGTR
CCCCCCCCCCHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHCC
KGAFFEQPIHSTVSGEVVGHEMKFDASGKRVNCMIVKNDFKYELHESVKTRTDEEIDKLT
CCCHHHCCHHHCCCCCEECEEEEECCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHH
KEDYVNITKEAGLVGLGGSGFPTYIKLNTKNKIDIILANGVECEPKLISDYEVMMESPDE
HHHHHEEHHHCCEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCHHCCHHHHHCCHHH
LIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFSLNSYTEYDIKVVPVGNHYPQGWELE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEE
AIEAATGIKVPQFKLPADYGIIPFNVSTLQSIYHAVKFNLPVLERYFVLSGDGVVNKSFK
EEHHHCCCCCCCEECCCCCCEEECCHHHHHHHHHHHHCCCCHHEEEEEEECCCEECCCHH
ARIGTPIQSLIQLAGGYVDKAVPKTLIMGGPMMGSNVTNDDIVTTHTATSLIVQNSLLLN
HHCCCHHHHHHHHHCCHHHHHCCHHEEECCCCCCCCCCCCCEEEEEHHHHHHHCCCEEEC
EDPCIHCASCVYSCPVQIQPVQIMNAVKANDKDFLKALSVNKCIECGLCSFVCPSKIHLT
CCCCHHHHHHHHHCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCHHH
DYMREGKRILRG
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]