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The map label for this gene is yabF [H]

Identifier: 162446902

GI number: 162446902

Start: 18966

End: 19505

Strand: Direct

Name: yabF [H]

Synonym: ACL_0015

Alternate gene names: 162446902

Gene position: 18966-19505 (Clockwise)

Preceding gene: 162446901

Following gene: 162446903

Centisome position: 1.27

GC content: 31.11

Gene sequence:

>540_bases
ATGAAACAAAAAATATATGTTGTTGAAGGCACACACGATGAAACGCTACTTAAACAAATAGATCCAAATATTAGAACTGT
TTCTGTTGGGGGATCACAAATCAAAGAAGATGTGATTCAGTTTTTAAAAACCTATGAAGATAAATTTCAAATCATACTTT
TATTAGATCCTGATTATACGGGTGAACAAATAAGAAAAAGGATTGCTAAACATTTAACAAATCCTACACATATCTTTGTT
CAAAAACATAAAGCGATTAGTAAAAATAAAAAGAAGATAGGTGTTGAACACCTATCCTTAGAAGATTTAAAGACCATGCT
TCTCCATGAGGTACAAGAACTACCTAAAGTAGAGTCTATTACATTAGATAGTTTATATAAATTGGGACTTAGCGGTCAAA
CAGACTCTAAAGCCAAAAGAGACTACTTAACCAGCAAATTAAACCTAACCTATAGTAACTCCAAGACACTGATACAAAGG
CTTAATTGGCTAGGGTTAAGTTATAAAGATTTAGAGGATATATTATATGCATCAAGCTAA

Upstream 100 bases:

>100_bases
AGAAAGGTAATATTGTAACTTTATCTGAGCATTCATCTATTGTACACGCACTTGTAACATCAAGTGTAAAATCAGATCCT
AAGTTCTTCTATAAAAAAAG

Downstream 100 bases:

>100_bases
AAAAAGATTTGGTCAAAACTTTTTAACAGATAAGAATTTATTGAAAAAGATTGTTGACTCAGCACAAATTCATGATAAAA
ACGTATTAGAAATTGGACCA

Product: primase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKQKIYVVEGTHDETLLKQIDPNIRTVSVGGSQIKEDVIQFLKTYEDKFQIILLLDPDYTGEQIRKRIAKHLTNPTHIFV
QKHKAISKNKKKIGVEHLSLEDLKTMLLHEVQELPKVESITLDSLYKLGLSGQTDSKAKRDYLTSKLNLTYSNSKTLIQR
LNWLGLSYKDLEDILYASS

Sequences:

>Translated_179_residues
MKQKIYVVEGTHDETLLKQIDPNIRTVSVGGSQIKEDVIQFLKTYEDKFQIILLLDPDYTGEQIRKRIAKHLTNPTHIFV
QKHKAISKNKKKIGVEHLSLEDLKTMLLHEVQELPKVESITLDSLYKLGLSGQTDSKAKRDYLTSKLNLTYSNSKTLIQR
LNWLGLSYKDLEDILYASS
>Mature_179_residues
MKQKIYVVEGTHDETLLKQIDPNIRTVSVGGSQIKEDVIQFLKTYEDKFQIILLLDPDYTGEQIRKRIAKHLTNPTHIFV
QKHKAISKNKKKIGVEHLSLEDLKTMLLHEVQELPKVESITLDSLYKLGLSGQTDSKAKRDYLTSKLNLTYSNSKTLIQR
LNWLGLSYKDLEDILYASS

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20599; Mature: 20599

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKIYVVEGTHDETLLKQIDPNIRTVSVGGSQIKEDVIQFLKTYEDKFQIILLLDPDYT
CCCEEEEEECCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
GEQIRKRIAKHLTNPTHIFVQKHKAISKNKKKIGVEHLSLEDLKTMLLHEVQELPKVESI
HHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHCHHHCCHHHHHHHHHHHHHHCCCCHHH
TLDSLYKLGLSGQTDSKAKRDYLTSKLNLTYSNSKTLIQRLNWLGLSYKDLEDILYASS
HHHHHHHHCCCCCCCCHHHHHHHHHHEEEEECCHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKQKIYVVEGTHDETLLKQIDPNIRTVSVGGSQIKEDVIQFLKTYEDKFQIILLLDPDYT
CCCEEEEEECCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
GEQIRKRIAKHLTNPTHIFVQKHKAISKNKKKIGVEHLSLEDLKTMLLHEVQELPKVESI
HHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHCHHHCCHHHHHHHHHHHHHHCCCCHHH
TLDSLYKLGLSGQTDSKAKRDYLTSKLNLTYSNSKTLIQRLNWLGLSYKDLEDILYASS
HHHHHHHHCCCCCCCCHHHHHHHHHHEEEEECCHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]