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The map label for this gene is rbsC [H]

Identifier: 162420740

GI number: 162420740

Start: 1571281

End: 1572279

Strand: Direct

Name: rbsC [H]

Synonym: YpAngola_A1521

Alternate gene names: 162420740

Gene position: 1571281-1572279 (Clockwise)

Preceding gene: 162420171

Following gene: 162419212

Centisome position: 34.88

GC content: 55.26

Gene sequence:

>999_bases
ATGGATAAGGCAACCGAGACCCGCCGCGAGGGAGCACCTACCGCGAGCAAACTCAACGGCCAGGCCATGCTGGGCTGGGT
TTTACACCATATTGTCTGGATCTGGCTGATTGCACTGGTTGTCATCTTTGGTGTCTTCAATGAATTTTTCCTGACGATAT
CCAATCTGCAAAACGTGATGGTGCAGGCCACGGTTTTGGGAACCTTAGGGCTGGCGGTGGCACTGCCGCTGCTGGTGGCT
GAGATTGACTTGTCGATTCCGGCAAATGCGGGTTTCTCGGCGGCGGTGGGGGCGATGGCTTATGCCGAACTGGGGCTGCC
GTGGCCTATTGCAGCATTAATAGGTTTACTGGTTGGCACATTTATCGGTTTCTTCAATGGGGTGTGCATCACCCGATTGA
AAATGGTCTCGCTGATAGAGACGTTGGCGATGATGATTATTATCCAGGGCGCGCTGTTGGCGCTGACACAGGGCAAGACC
CTGACAAACCTTTCTGAAGGTTATATTTGGATTGGCCAGGCGACCATCGGGGGGGGGCCCCTGATGCCGGTGGTGTTTCT
TCTGGTGCTGGCGGTGATGGGGGCGGTGCTGAAGTATACGGTGTTAGGCCGTTCGATCTATGCCGTCGGTGGTAATCCTG
TTGCGTCAAACTCCGCCGGGATTCGGGTCGCGCGGGTCAAAATTATTGCTTACACGATTTCAGGGTTCCTTGCCGCACTT
GCTGGCTTTTTGTTGGCATCGTGGCAGATGGCCATCACCTCAAACCAAGGCTCGAGCTACTTGCTCTACGCCATCGCCGC
GCCCATTATCGGCGGCGTCAGTGTTTTTGGTGGGCACGGTAACGTCAAGGGGGTGCTGGGCGGTGTGCTGCTGCTGACGG
TGATCCAAGTTGGCCTCGCCATTGTCAATGTCCCTTCGTTCTATGTCGGCATGATTGGCGGGGTGATCATTTTTATCGCT
GTCGCCATTGATGCTTTCCGGATCCGTTACTTCGGATAG

Upstream 100 bases:

>100_bases
TTAAAGAGATATTGACGGGAGATGACATCACCGCCGAACGTCTGCGGGCATCTGTGCAGGCATAAAGCCACGGGATAATA
ACCAGAGCGGAGAGAGGGAA

Downstream 100 bases:

>100_bases
CCCAGCGACCCGCTAATCCAGTTTTCTACTGATTAATCCCATGTTCTGCTGACTAAAGCCATATTCTACTGACTAAAGCC
ATATTCTACTGACTAAACCC

Product: putative ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGGPLMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG

Sequences:

>Translated_332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGGPLMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG
>Mature_332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGGPLMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=32.2475570032573, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=32.8125, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788896, Length=301, Percent_Identity=30.8970099667774, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789992, Length=341, Percent_Identity=27.5659824046921, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=30.1038062283737, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1788471, Length=330, Percent_Identity=30.9090909090909, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=28.2142857142857, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787794, Length=293, Percent_Identity=27.6450511945392, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693214, Length=238, Percent_Identity=30.2521008403361, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34680; Mature: 34680

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVM
CCCCHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQATVLGTLGLAVALPLLVAEIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKTLTNLSEGYIWIGQATIGGGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCC
LMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLA
HHHHHHHHHHEEECCCCCCEEHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
IVNVPSFYVGMIGGVIIFIAVAIDAFRIRYFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVM
CCCCHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQATVLGTLGLAVALPLLVAEIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKTLTNLSEGYIWIGQATIGGGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCC
LMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLA
HHHHHHHHHHEEECCCCCCEEHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
IVNVPSFYVGMIGGVIIFIAVAIDAFRIRYFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]