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The map label for this gene is ycbB [H]

Identifier: 162419158

GI number: 162419158

Start: 2055265

End: 2057055

Strand: Direct

Name: ycbB [H]

Synonym: YpAngola_A1973

Alternate gene names: 162419158

Gene position: 2055265-2057055 (Clockwise)

Preceding gene: 162419891

Following gene: 162420348

Centisome position: 45.63

GC content: 50.03

Gene sequence:

>1791_bases
ATGACCGTGTTTACTGCATCAGCCGCTGCTCCCGTAATGCCCGTGGATTCATCTTCAGCTTTGCCAGCACGTGGTGCAAC
CATGTCCGTGGCTCAAAGTCGTTCGCAATTATTGGCCGCGCTTCCAAAAGATGTCGTGCCACTCTATGCCGCGGAATTAG
CGTCATTATATGCGGCGAACCAAATGCAGCCTATGTGGCAAGACCGGGTTGCTGTTCAACGTTTTCAGCAACAGTTAGCG
GAGGTTGGGCTTTCAGGCATTCAACCGCAGTTTATGCAATGGGTTAAATGGTTGAGCGAGCCAGAAATCACCGGTATGGC
GCGTGATATTATTCTATCGGATGCGATGCTGGGTTATTTACACTTTATTTCCGGTGTCGGTGCTAATGGCAGTGTTTGGT
TATACAGTAATGTGCCTTACAAAATGGCCATGCCGCCTGCAGCAGTTTTAAACGCCTGGCAGAAAGCGGTCAATGAAGGC
TCGACAGCCTCTTATCTGGCGTCGTTGGCTCCGCAGCATCCGCAATACGATAAAATGCAACAGGCGTTGAAGTTGATGCT
AGCAGACCGACGCCCGTGGCCACAGATGCCTACTGGGCCAAGTTTACGGCCGGGGCAACTTAGCGACGATATCCCTGCAT
TGCGGGAAATCCTTGACCGAACGGGTATGTTGCACCCAACAACCCCCGTGAAAGCGCCAGAGGTGATCCCTGTGGAGAAC
CCTACGGTGGCCGTCGTTAATGACGATCTCTCTGTTGATGAAGAAAAAAATCGGACTCAGACCAACAGCTTGGTGGTCAG
CCCATCAGCCGTCTCTGTCCCTGAGAGCGATGATGCGGCACCCGCACCGATGCCTCCCGTGAGCGTGGTCACGTTAACTG
ACAATATCTATACTCCTGAGTTGGTAGAAGCCGTTAAACGCTTCCAGCAATGGCAGGGGCTCACTGATGACGGTGTTATC
GGCCCCCGTACCCGCGAATGGTTGAATGTCTCGCCACAAACGCGGGCCACGTTATTGGCATTGAATATCCAGCGATTACG
TATTTTGCCGGGGCATGTTGATAACGGGATTATGGTTAATATCCCAAATTATTCTCTGAATTATTATAAAGATGGGGCCG
AAGTGCTTTCATCTCGGGTGATTGTTGGCCGTCCAAGTCGTAAAACGCCCCTGATGAGTAGTGCGTTGAATAATGTGGTG
GTGAACCCGCCGTGGAACGTGCCGACCTCATTGGTACGGCAGGATATCGTGCCCAAAGCACGTAACGATGCCGGGTATTT
TCAGCGTAATGGCTATACCGTGTTGTCCGGATGGAGTAATGATGCTGAAGTGATCAATCCTTCAATGATTGACTGGAGTA
TTATCTCGCCGAATAACTTCCCTTACCGTTTGCGTCAGGCACCAGGTGCTAATAACTCGTTAGGGCGGTTCAAATTTAAC
ATGCCAAGTTCTGATGCTATCTATTTACATGACACGCCGAATCATGGCCTGTTCCAAAAGGACATTCGCGCCCTGAGTTC
AGGTTGTGTCCGTGTCAATAAAGCGTCTGATTTAGCGAACATGCTGCTGCAAGATGCTGGCTGGAATGATGCACGGGTCT
CTTCCAAGGTAAAACAAGGTGATACCACCTACGTCAATATCCGCCAGCGCGTTCCGGTGCAATTGTATTATCTGACAGCA
TGGGTTGCGGAAGACGGTAAACCGCAGTTTAGAACAGATATTTACAATTATGATAAAATGGTGCGATCTGGTGCACAAAT
CTCACAGCAGGCTGAGTTTTTATTGCAATAA

Upstream 100 bases:

>100_bases
TGACGTACTGAGATGAGCATACAAGGGGCATGGAATGTCGATGATAAAAAGAAAGTTACAACGCGCACTCGTTTTATACT
GCGCTTTAGTTTGCAGCCTG

Downstream 100 bases:

>100_bases
ATGCAGTAAAACTCAATAACTAATGGTCTTAAATACCGGGCTATCTTGTGGGCGCTTGTTCGTAAGCGCCCTGTCACCTG
ACCTTAACGCACAGTGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYAANQMQPMWQDRVAVQRFQQQLA
EVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEG
STASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAPEVIPVEN
PTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYTPELVEAVKRFQQWQGLTDDGVI
GPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVV
VNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFN
MPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTA
WVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ

Sequences:

>Translated_596_residues
MTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYAANQMQPMWQDRVAVQRFQQQLA
EVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEG
STASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAPEVIPVEN
PTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYTPELVEAVKRFQQWQGLTDDGVI
GPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVV
VNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFN
MPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTA
WVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ
>Mature_595_residues
TVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYAANQMQPMWQDRVAVQRFQQQLAE
VGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGS
TASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAPEVIPVENP
TVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYTPELVEAVKRFQQWQGLTDDGVIG
PRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVV
NPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFNM
PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAW
VAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=622, Percent_Identity=54.983922829582, Blast_Score=669, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 65750; Mature: 65618

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYAAN
CEEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQYDKMQ
HHHHCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
QALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAPEVIPVEN
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCC
PTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYTPE
CEEEEEECCCCCCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
LVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVN
HHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEHEEEEEECCCCCCCEEEE
IPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKA
CCCCCCEEECCHHHHHHCCEEEECCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHCCCCC
RNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFN
CCCCCCEECCCEEEEECCCCCCHHCCCCEEEEEEECCCCCCEEEECCCCCCCCCCEEEEC
MPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVKQG
CCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHCC
DTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ
CCEEEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
TVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYAAN
EEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQYDKMQ
HHHHCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
QALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAPEVIPVEN
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCC
PTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYTPE
CEEEEEECCCCCCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
LVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVN
HHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEHEEEEEECCCCCCCEEEE
IPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKA
CCCCCCEEECCHHHHHHCCEEEECCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHCCCCC
RNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFN
CCCCCCEECCCEEEEECCCCCCHHCCCCEEEEEEECCCCCCEEEECCCCCCCCCCEEEEC
MPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVKQG
CCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHCC
DTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ
CCEEEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]