Click here to switch to the map view.

The map label for this gene is rpoH [H]

Identifier: 162418961

GI number: 162418961

Start: 601947

End: 602804

Strand: Direct

Name: rpoH [H]

Synonym: YpAngola_A0580

Alternate gene names: 162418961

Gene position: 601947-602804 (Clockwise)

Preceding gene: 162421181

Following gene: 162418426

Centisome position: 13.36

GC content: 50.23

Gene sequence:

>858_bases
ATGACCAAAGAAATGCAAACTTTAGCCTTAGTGCCCCAGGGTAGTCTGGAAGCCTATATTCGGGCTGCCAATGCCTATCC
AATGCTAACTGCAGAGGAAGAACGGGAGCTGGCTGAACGGCTGCATTACCAGGGCGATCTGGGAGCGGCTAAACAGCTTA
TCCTGTCTCACCTGCGCTTTGTTGCTCATGTTGCCCGCAACTATTCCGGGTACGGTTTGCCACAAGCTGACCTTATTCAG
GAAGGTAATATTGGCTTGATGAAAGCGGTTCGCCGTTTTAACCCTGAAGTCGGGGTGCGTCTGGTGTCCTTTGCGGTTCA
CTGGATCAAAGCAGAAATTCATGAATATGTTCTGCGTAACTGGCGGATTGTGAAGGTTGCAACTACCAAAGCTCAGCGTA
AGCTGTTCTTCAACCTGCGTAAAACCAAGCAGCGCCTGGGCTGGTTTAATCAGGACGAAGTAGAATTGGTCGCCAAAGAG
CTTGGCGTGACCAGTAAAGACGTTCGCGAGATGGAGTCACGCATGTCCGCTCAGGATATGACTTTCGATCCTTCTCCTGA
TGATGAAGCACGTGACGGCCAATTCATGGCCCCAGTCCTGTATTTGCAGGATAAAACCTCTGATTTTGCTGATGGCATCG
AAGAGGATAACTGGGACAGCCACGCAGCAGATAAACTGTCTTATGCGTTGGAAGGGTTGGACGAGCGGAGCCAACATATT
ATTCGCGCCCGTTGGCTGGACGATGAGAACAAGTCCACCTTACAAGAACTGGCCGATCAGTACGGTGTGTCTGCTGAACG
TGTACGTCAGCTTGAAAAGAACGCGATGAAAAAATTGCGTATGGCGATTGAAGCCTGA

Upstream 100 bases:

>100_bases
CAAAATGATAAGTTGCTCAGCGCTTGAATCTGTATAACCAGGTGCTAAAATATTAGCGCTGAGAGAAACCTGCACTAAAC
ATGCAACTGAGAGGGTTTAA

Downstream 100 bases:

>100_bases
TACAACAAACAGACAGATGCTGTAATCCGGCACGATAAAGAAGGGCGATATTGATTATCGCCCTTTTGCTGTGCCCAGAA
AACCCCCAGCTAGGCTGGGG

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAAKQLILSHLRFVAHVARNYSGYGLPQADLIQ
EGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVAKE
LGVTSKDVREMESRMSAQDMTFDPSPDDEARDGQFMAPVLYLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHI
IRARWLDDENKSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA

Sequences:

>Translated_285_residues
MTKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAAKQLILSHLRFVAHVARNYSGYGLPQADLIQ
EGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVAKE
LGVTSKDVREMESRMSAQDMTFDPSPDDEARDGQFMAPVLYLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHI
IRARWLDDENKSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA
>Mature_284_residues
TKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAAKQLILSHLRFVAHVARNYSGYGLPQADLIQE
GNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVAKEL
GVTSKDVREMESRMSAQDMTFDPSPDDEARDGQFMAPVLYLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHII
RARWLDDENKSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=285, Percent_Identity=83.5087719298246, Blast_Score=483, Evalue=1e-138,
Organism=Escherichia coli, GI1789098, Length=281, Percent_Identity=28.1138790035587, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789448, Length=241, Percent_Identity=29.8755186721992, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 32701; Mature: 32569

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAAKQLILSHLRF
CCCCCCCEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VAHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
HHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVAKELGVTSKDVREMESRMSAQDM
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
TFDPSPDDEARDGQFMAPVLYLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHI
CCCCCCCCCCCCCCEECCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IRARWLDDENKSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAAKQLILSHLRF
CCCCCCEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VAHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
HHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVAKELGVTSKDVREMESRMSAQDM
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
TFDPSPDDEARDGQFMAPVLYLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHI
CCCCCCCCCCCCCCEECCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IRARWLDDENKSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7501460 [H]