Click here to switch to the map view.

The map label for this gene is kdsD [H]

Identifier: 162418897

GI number: 162418897

Start: 1187755

End: 1188783

Strand: Direct

Name: kdsD [H]

Synonym: YpAngola_A1148

Alternate gene names: 162418897

Gene position: 1187755-1188783 (Clockwise)

Preceding gene: 162418376

Following gene: 162421380

Centisome position: 26.37

GC content: 50.53

Gene sequence:

>1029_bases
GTGAAAGATGACGGTAATACCAACATTGGGCGGATATTAAGTATGTCTACTTTTGATTTACAGCCGGGCGTGGATTTCCA
GCAGGCAGGTAAGCAGGTACTTCAGATTGAACGCGAAGGGCTGGCTCAACTCGATCAATACATAAACGAGGATTTCTCCA
GAGCCTGTGAGGCCATTTTTCGTTGCCACGGCAAAGTCGTCGTGATGGGAATGGGCAAATCTGGTCATATTGGCTGCAAA
ATTGCAGCCACATTCGCCAGCACGGGCACACCTGCATTTTTTGTCCATCCTGGTGAAGCCAGCCATGGCGATTTGGGCAT
GATCACGCCACAAGATATTGTATTAGCTATCTCTAACTCTGGGGAATCCAACGAAATCCTCACGTTGATCCCCGTGCTTA
AGCGCCAGAAAATTCTGTTGATTTGCATGAGCAGTAACCCTGAGAGCACCATGGGTAAAGCGGCCGATATTCACTTGTGC
ATTAATGTGCCACAAGAGGCCTGTCCGCTGGGGCTAGCGCCAACCACCAGTACGACTGCAACACTGGTTATGGGGGATGC
GTTGGCGGTAGCCTTGCTCAAAGCACGGGGTTTCACGCAGGAAGATTTCGCACTCTCTCACCCAGGTGGCGCGCTGGGGC
GTAAGTTGCTGCTGCGGATCAGCGATATTATGCATACGGGTACGGAGATCCCCACCGTCAGCCCTGATGCATCATTACGT
GATGCCTTGCTAGAAATTACTCGGAAAAGTCTGGGTTTGACCGTTATTTGTGACGATTCAATGAGGATTAAAGGTATCTT
TACCGACGGTGACTTGCGCCGGGTATTTGATATGGGCATTGATCTGAATAATGCAAAAATTGCTGACGTCATGACTCGCG
GGGGTATTCGAGTCCCTCCGAACATATTGGCGGTGGACGCGCTCAATCTGATGGAGTCACGCCATATCACTGCGTTGCTC
GTCGCTGATGGTGACCAATTACTGGGTGTCGTACATATGCACGATATGCTGAGAGCCGGTGTTGTCTGA

Upstream 100 bases:

>100_bases
TGTTGTTTTTTGCTCCCATAAGTGCGCTGTAAAATACATTTCCCTATAAATTTCAATGCTCAGGAAGGCTTGGAGCGAAA
GCAACCAACACACCTACAGC

Downstream 100 bases:

>100_bases
CAGTTTAGTTGAGTCAATGAGCGCCGCGAACAATGCTATCAGTCAGTGATTCGGGTGAGTGAGTGCCGCTACCAATGTTG
TAACTTCAAGAACGCTGCAA

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKDDGNTNIGRILSMSTFDLQPGVDFQQAGKQVLQIEREGLAQLDQYINEDFSRACEAIFRCHGKVVVMGMGKSGHIGCK
IAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLAISNSGESNEILTLIPVLKRQKILLICMSSNPESTMGKAADIHLC
INVPQEACPLGLAPTTSTTATLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPDASLR
DALLEITRKSLGLTVICDDSMRIKGIFTDGDLRRVFDMGIDLNNAKIADVMTRGGIRVPPNILAVDALNLMESRHITALL
VADGDQLLGVVHMHDMLRAGVV

Sequences:

>Translated_342_residues
MKDDGNTNIGRILSMSTFDLQPGVDFQQAGKQVLQIEREGLAQLDQYINEDFSRACEAIFRCHGKVVVMGMGKSGHIGCK
IAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLAISNSGESNEILTLIPVLKRQKILLICMSSNPESTMGKAADIHLC
INVPQEACPLGLAPTTSTTATLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPDASLR
DALLEITRKSLGLTVICDDSMRIKGIFTDGDLRRVFDMGIDLNNAKIADVMTRGGIRVPPNILAVDALNLMESRHITALL
VADGDQLLGVVHMHDMLRAGVV
>Mature_342_residues
MKDDGNTNIGRILSMSTFDLQPGVDFQQAGKQVLQIEREGLAQLDQYINEDFSRACEAIFRCHGKVVVMGMGKSGHIGCK
IAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLAISNSGESNEILTLIPVLKRQKILLICMSSNPESTMGKAADIHLC
INVPQEACPLGLAPTTSTTATLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPDASLR
DALLEITRKSLGLTVICDDSMRIKGIFTDGDLRRVFDMGIDLNNAKIADVMTRGGIRVPPNILAVDALNLMESRHITALL
VADGDQLLGVVHMHDMLRAGVV

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=328, Percent_Identity=77.4390243902439, Blast_Score=530, Evalue=1e-152,
Organism=Escherichia coli, GI87082151, Length=316, Percent_Identity=48.4177215189873, Blast_Score=291, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 36578; Mature: 36578

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDDGNTNIGRILSMSTFDLQPGVDFQQAGKQVLQIEREGLAQLDQYINEDFSRACEAIF
CCCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCHGKVVVMGMGKSGHIGCKIAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLAISNS
HCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEEEEEEECC
GESNEILTLIPVLKRQKILLICMSSNPESTMGKAADIHLCINVPQEACPLGLAPTTSTTA
CCCCCEEEEEEHHCCCEEEEEEECCCCCHHCCCCEEEEEEEECCHHHCCCCCCCCCCCEE
TLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPDASLR
EEEEHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
DALLEITRKSLGLTVICDDSMRIKGIFTDGDLRRVFDMGIDLNNAKIADVMTRGGIRVPP
HHHHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
NILAVDALNLMESRHITALLVADGDQLLGVVHMHDMLRAGVV
CEEEHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDDGNTNIGRILSMSTFDLQPGVDFQQAGKQVLQIEREGLAQLDQYINEDFSRACEAIF
CCCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCHGKVVVMGMGKSGHIGCKIAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLAISNS
HCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEEEEEEECC
GESNEILTLIPVLKRQKILLICMSSNPESTMGKAADIHLCINVPQEACPLGLAPTTSTTA
CCCCCEEEEEEHHCCCEEEEEEECCCCCHHCCCCEEEEEEEECCHHHCCCCCCCCCCCEE
TLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPDASLR
EEEEHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
DALLEITRKSLGLTVICDDSMRIKGIFTDGDLRRVFDMGIDLNNAKIADVMTRGGIRVPP
HHHHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
NILAVDALNLMESRHITALLVADGDQLLGVVHMHDMLRAGVV
CEEEHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]