BacMap

Definition	Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome.
Accession	NC_010125
Length	3,944,163

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The map label for this gene is phbB [H]

Identifier: 162149075

GI number: 162149075

Start: 3396968

End: 3397720

Strand: Direct

Name: phbB [H]

Synonym: GDI_3305

Alternate gene names: 162149075

Gene position: 3396968-3397720 (Clockwise)

Preceding gene: 162149074

Following gene: 162149077

Centisome position: 86.13

GC content: 70.12

Gene sequence:

>753_bases
ATGGTATCCATGATCCCTGCCCCGGACCCGACACCGCGCGTGGCCTTGGTGACAGGCGGCACGCGCGGCATCGGCGCGGC
CGTCAGCCGCGCCCTTCGCGACGCCGGCCGCCGGGTCGTGGCGACCTACGGCACGAATGTCGAACAGGCCCGCCATTTCG
AAGCCGAGACCGGCATCCGCGCCGTTGCCTTCGACGTCGCGGATCTGGAAGCCTGCGCCGACGCCCTGGCGCGGATCGCG
GAACGGGACGGCCCGGTCACCATCCTGGTCAACAATGCCGGCATCACCCGCGATTCCACCATCGGCCGCATGACCCGCGC
CGCCTGGGACGACGTCATCGACACCAACCTGGGCGGGGCCTTCAATCTGTGCCACCTGGCCATGCCCGCCATGCGGGCCC
AGGGATTCGGCCGCATCGTCAACATGGCCAGCATCAACGGCCAGACCGGCCAGTTCGGCCAGGCGAACTACGCCGCGTCC
AAGGCCGGGCTGCAGGGCCTGACCCGCGCCCTGGCGCTGGAAGGCGCGCGCCACAACATCACGGTCAACACCGTGGCGCC
CGGCTATATCGACACCGCCATGCTGGAAACGGTGCCGCCGCATATCCTGACCGGCATCATCGACCGCATCCCGGTCGGGC
GGCTGGGCACGCCCGAGGACGTGGCCCGTGCGGTGACGTTCCTGACGGCGGACGAAGCCGGGTTCATCACCGGCTCCACC
CTGTCGGTCAACGGCGGCCAGCACATGCCCTGA

Upstream 100 bases:

>100_bases
CCTGCTGGGGGCCCCGCTGGCCGCGTGGCTGCTGCGCCATGGCTGACAAAACGCATGGAAGGCGCCGCACGATCCTGTAG
GATTCCATTCTGAAACAAGG

Downstream 100 bases:

>100_bases
GGCTGCTTCAAGAGCCTGTATTCCTTTTTACCGGAATGCATCCTTCTCCCGCCTCAGGCGGGCGAACGTCGCCACGTCGG
GGGCGCGCAGGAACGGGTTG

Product: acetoacetyl-CoA reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MVSMIPAPDPTPRVALVTGGTRGIGAAVSRALRDAGRRVVATYGTNVEQARHFEAETGIRAVAFDVADLEACADALARIA
ERDGPVTILVNNAGITRDSTIGRMTRAAWDDVIDTNLGGAFNLCHLAMPAMRAQGFGRIVNMASINGQTGQFGQANYAAS
KAGLQGLTRALALEGARHNITVNTVAPGYIDTAMLETVPPHILTGIIDRIPVGRLGTPEDVARAVTFLTADEAGFITGST
LSVNGGQHMP

Sequences:

>Translated_250_residues
MVSMIPAPDPTPRVALVTGGTRGIGAAVSRALRDAGRRVVATYGTNVEQARHFEAETGIRAVAFDVADLEACADALARIA
ERDGPVTILVNNAGITRDSTIGRMTRAAWDDVIDTNLGGAFNLCHLAMPAMRAQGFGRIVNMASINGQTGQFGQANYAAS
KAGLQGLTRALALEGARHNITVNTVAPGYIDTAMLETVPPHILTGIIDRIPVGRLGTPEDVARAVTFLTADEAGFITGST
LSVNGGQHMP
>Mature_250_residues
MVSMIPAPDPTPRVALVTGGTRGIGAAVSRALRDAGRRVVATYGTNVEQARHFEAETGIRAVAFDVADLEACADALARIA
ERDGPVTILVNNAGITRDSTIGRMTRAAWDDVIDTNLGGAFNLCHLAMPAMRAQGFGRIVNMASINGQTGQFGQANYAAS
KAGLQGLTRALALEGARHNITVNTVAPGYIDTAMLETVPPHILTGIIDRIPVGRLGTPEDVARAVTFLTADEAGFITGST
LSVNGGQHMP

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=38.8235294117647, Blast_Score=147, Evalue=9e-36,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=40.0826446280992, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI7705925, Length=237, Percent_Identity=35.0210970464135, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI32483357, Length=241, Percent_Identity=33.6099585062241, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=29.8804780876494, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI4504505, Length=234, Percent_Identity=33.7606837606838, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI66933014, Length=221, Percent_Identity=27.6018099547511, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI4503301, Length=206, Percent_Identity=28.1553398058252, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=31.4410480349345, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI31542939, Length=242, Percent_Identity=30.1652892561983, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=29.3877551020408, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=31.1203319502075, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=30.6772908366534, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=31.3492063492063, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=33.1578947368421, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.8080808080808, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI150247226, Length=187, Percent_Identity=30.4812834224599, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=28.0487804878049, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4503817, Length=204, Percent_Identity=26.9607843137255, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=25, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=29.6442687747036, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=32.1637426900585, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI223718074, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787335, Length=238, Percent_Identity=44.1176470588235, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=34.5238095238095, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1789208, Length=242, Percent_Identity=34.297520661157, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87082160, Length=239, Percent_Identity=33.0543933054393, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790717, Length=237, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.6938775510204, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788459, Length=240, Percent_Identity=33.75, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=31.0756972111554, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI2367365, Length=238, Percent_Identity=34.8739495798319, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=30.3846153846154, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=31.9672131147541, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787820, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=28.4552845528455, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=40.4081632653061, Blast_Score=168, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=37.9032258064516, Blast_Score=160, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=35.4330708661417, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=34.412955465587, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17568967, Length=232, Percent_Identity=32.7586206896552, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI115534694, Length=242, Percent_Identity=33.4710743801653, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=31.8007662835249, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538182, Length=250, Percent_Identity=30.4, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=29.4573643410853, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=28.8, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=29.6577946768061, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=248, Percent_Identity=29.8387096774194, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=28.6290322580645, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=27.8225806451613, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=24.6323529411765, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=27.3764258555133, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=28.6821705426357, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=30.5970149253731, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=27.4809160305344, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=27.3076923076923, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=194, Percent_Identity=27.8350515463918, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=28.3524904214559, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=28.5140562248996, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=255, Percent_Identity=27.0588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=205, Percent_Identity=27.3170731707317, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=25.6704980842912, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=25.0950570342205, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=202, Percent_Identity=24.2574257425743, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=247, Percent_Identity=36.8421052631579, Blast_Score=128, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=37.8600823045267, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=34.6774193548387, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI18859837, Length=202, Percent_Identity=36.1386138613861, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=33.0708661417323, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=31.8367346938775, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=32.0987654320988, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=30.672268907563, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=33.596837944664, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=30.7086614173228, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644337, Length=179, Percent_Identity=32.9608938547486, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=27.3684210526316, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24641232, Length=234, Percent_Identity=30.3418803418803, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24665243, Length=198, Percent_Identity=32.8282828282828, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24665247, Length=199, Percent_Identity=33.1658291457286, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221331218, Length=198, Percent_Identity=32.8282828282828, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI221331216, Length=199, Percent_Identity=33.1658291457286, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24663911, Length=231, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581726, Length=147, Percent_Identity=26.530612244898, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24656154, Length=271, Percent_Identity=29.8892988929889, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19922628, Length=271, Percent_Identity=29.8892988929889, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=27.9661016949153, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574402, Length=245, Percent_Identity=28.9795918367347, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356301, Length=228, Percent_Identity=25, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584744, Length=245, Percent_Identity=28.9795918367347, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011283
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.36 [H]

Molecular weight: Translated: 26072; Mature: 26072

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSMIPAPDPTPRVALVTGGTRGIGAAVSRALRDAGRRVVATYGTNVEQARHFEAETGIR
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCE
AVAFDVADLEACADALARIAERDGPVTILVNNAGITRDSTIGRMTRAAWDDVIDTNLGGA
EEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
FNLCHLAMPAMRAQGFGRIVNMASINGQTGQFGQANYAASKAGLQGLTRALALEGARHNI
HHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
TVNTVAPGYIDTAMLETVPPHILTGIIDRIPVGRLGTPEDVARAVTFLTADEAGFITGST
EEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHEECCCCCEEECCE
LSVNGGQHMP
EEECCCCCCC
>Mature Secondary Structure
MVSMIPAPDPTPRVALVTGGTRGIGAAVSRALRDAGRRVVATYGTNVEQARHFEAETGIR
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCE
AVAFDVADLEACADALARIAERDGPVTILVNNAGITRDSTIGRMTRAAWDDVIDTNLGGA
EEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
FNLCHLAMPAMRAQGFGRIVNMASINGQTGQFGQANYAASKAGLQGLTRALALEGARHNI
HHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
TVNTVAPGYIDTAMLETVPPHILTGIIDRIPVGRLGTPEDVARAVTFLTADEAGFITGST
EEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHEECCCCCEEECCE
LSVNGGQHMP
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7582015; 11481430 [H]